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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...gacaatatattcgtgaatgatgttgcataatcttgttatgcttcaatatgatgttaagtccatttacattttctcacaagtttactttatttgattctagATTTATGCAATAGGAGCGATTGCGATTTCATCATGGGTTTGGGCAAGATGGAATGAGAGGAAGGGCCGAGGTGGGGGGTCTCCCAATGATGAGAGGGGTG

Basic information

species Glycine max
transcript GLYMA20G33020.1
intron # 1
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|209720463|gb|BW674658.1|BW674658
EST:     CTGACCACTCTCCCGCTGCTAAGACAACCAATCCTCTTATACTCTGGCAG                         ATTTATGCAATAGGAGCGATTGCGATTTCATCATGGGTTTGGGCAAGATGG
genomic: CTGACCACTCTCCCGCTGCTAAGACAACCAATCCTCTTATACTCTGGCAGgtaggttgtt ... ttgattctagATTTATGCAATAGGAGCGATTGCGATTTCATCATGGGTTTGGGCAAGATGG
EST: gi|209700915|gb|BW683119.1|BW683119
EST:     CTGACCACTCTCCCGCTGCTAAGACAACCAATCCTCTTATACTCTGGCAG                         ATTTATGCAATAGGAGCGATTGCGATTTCATCATGGGTTTGGGCAAGATGG
genomic: CTGACCACTCTCCCGCTGCTAAGACAACCAATCCTCTTATACTCTGGCAGgtaggttgtt ... ttgattctagATTTATGCAATAGGAGCGATTGCGATTTCATCATGGGTTTGGGCAAGATGG
EST: gi|15000805|gb|BI321619.1|BI321619
EST:     CTGACCACTCTCCCGCTGCTAAGACAACCAATCCTCTTATACTCTGGCAG                         ATTTATGCAATAGGAGCGATTGCGATTTCATCATGGGTTTGGGCAAGATGG
genomic: CTGACCACTCTCCCGCTGCTAAGACAACCAATCCTCTTATACTCTGGCAGgtaggttgtt ... ttgattctagATTTATGCAATAGGAGCGATTGCGATTTCATCATGGGTTTGGGCAAGATGG
EST: gi|31308463|gb|CD393666.1|CD393666
EST:     CTGACCACTCTCCCGCTGCGAAGACAACCAATCCTCTTATACTCTGGCAG                         ATTTATGCAATAGGAGCGATTGCGATTTCATCATGGGTTTGGGCAAGATGG
genomic: CTGACCACTCTCCCGCTGCTAAGACAACCAATCCTCTTATACTCTGGCAGgtaggttgtt ... ttgattctagATTTATGCAATAGGAGCGATTGCGATTTCATCATGGGTTTGGGCAAGATGG
EST: gi|6566889|gb|AW234521.1|AW234521
EST:     CTGACCACTCTCCCGCTGCTAAGACAACCAATCCTCTTATACTCTGGCAG                         ATTTATGCAATAGGAGCGATTGCGATTTCATCATGGGTTTGGGCAAGATGG
genomic: CTGACCACTCTCCCGCTGCTAAGACAACCAATCCTCTTATACTCTGGCAGgtaggttgtt ... ttgattctagATTTATGCAATAGGAGCGATTGCGATTTCATCATGGGTTTGGGCAAGATGG
EST: gi|120496497|gb|EH224664.1|EH224664
EST:     CTGACCACTCTCCCGCTGCTAAGACAACCAATCCTCTTATACTCTGGCAG                         ATTTATGCAATAGGAGCGATTGCGTTTTCATCATGGGTTTGGGCAAGATGG
genomic: CTGACCACTCTCCCGCTGCTAAGACAACCAATCCTCTTATACTCTGGCAGgtaggttgtt ... ttgattctagATTTATGCAATAGGAGCGATTGCGATTTCATCATGGGTTTGGGCAAGATGG
EST: gi|120531618|gb|EH259751.1|EH259751
EST:     CTGACCACTCTCCCGCTGCTAAGACAACCAATCCTCTTATACTCTGGCAG                         ATTTATGCAATAGGAGCGATTGCGATTTCATCATGGGTTTGGGCAAGATGG
genomic: CTGACCACTCTCCCGCTGCTAAGACAACCAATCCTCTTATACTCTGGCAGgtaggttgtt ... ttgattctagATTTATGCAATAGGAGCGATTGCGATTTCATCATGGGTTTGGGCAAGATGG
EST: gi|6724891|gb|AW309290.1|AW309290
EST:     CTGACCACTCTCCCGCTGCTAAGACAACCAATCCTCTTATACTCTGGCAG                         ATTTATGCAATAGGAGCGATTGCGATTTCATCATGGGTTTGGGCAAGATGG
genomic: CTGACCACTCTCCCGCTGCTAAGACAACCAATCCTCTTATACTCTGGCAGgtaggttgtt ... ttgattctagATTTATGCAATAGGAGCGATTGCGATTTCATCATGGGTTTGGGCAAGATGG
EST: gi|31468826|gb|CD410854.1|CD410854
EST:     CTGACCACTCTCCCGCTGTTAAGACAACCAATCCTCTTATACTCTGGCAG                         ATTTATGCAATAGGAGCGATTGCGATTTCATCATGGGTTTGGGCAAGATGG
genomic: CTGACCACTCTCCCGCTGCTAAGACAACCAATCCTCTTATACTCTGGCAGgtaggttgtt ... ttgattctagATTTATGCAATAGGAGCGATTGCGATTTCATCATGGGTTTGGGCAAGATGG
EST: gi|21888661|gb|BQ741874.1|BQ741874
EST:     CTGACCACTCTCCCGCTGCTAAGACAACCAATCCTCTTATACTCTGGCAG                         ATTTATGCAATAGGAGCGATTGCGATTTCATCATGGGTTTGGGCAAGATGG
genomic: CTGACCACTCTCCCGCTGCTAAGACAACCAATCCTCTTATACTCTGGCAGgtaggttgtt ... ttgattctagATTTATGCAATAGGAGCGATTGCGATTTCATCATGGGTTTGGGCAAGATGG
EST: gi|31471047|gb|CD413075.1|CD413075
EST:     CTGACCACTCTCCCGCTGCTAAGACAACCAATCCTCTTATACTCTGGCAG                         ATTTATGCAATAGGAGCGATTGCGATTTCATCATGGGTTTGGGCAAGATGG
genomic: CTGACCACTCTCCCGCTGCTAAGACAACCAATCCTCTTATACTCTGGCAGgtaggttgtt ... ttgattctagATTTATGCAATAGGAGCGATTGCGATTTCATCATGGGTTTGGGCAAGATGG
EST: gi|10233267|gb|BE802155.1|BE802155
EST:     CTGACCACTCTCCCGCTGCTAAGACAACCAATCCTCTTATACTCTGGCAG                         ATTTATGCAATAGGAGCGATTGCGATTTCATCATGGGTTTGGGCAAGATGG
genomic: CTGACCACTCTCCCGCTGCTAAGACAACCAATCCTCTTATACTCTGGCAGgtaggttgtt ... ttgattctagATTTATGCAATAGGAGCGATTGCGATTTCATCATGGGTTTGGGCAAGATGG
EST: gi|9440251|gb|BE440760.1|BE440760
EST:     CTGACCACTCTCCCGCTGCTAAGACAACCAATCCTCTTATACTCTGGCAG                         ATTTATGCAATAGGAGCGATTGCGATTTCATCATGGGTCTGGGCAAGATGG
genomic: CTGACCACTCTCCCGCTGCTAAGACAACCAATCCTCTTATACTCTGGCAGgtaggttgtt ... ttgattctagATTTATGCAATAGGAGCGATTGCGATTTCATCATGGGTTTGGGCAAGATGG
EST: gi|31561563|gb|CD487401.1|CD487401
EST:     CTGACCACTCTCCCGCTGCTAAGACAACCAATCCTCTTATACTCTGGCAG                         ATTTATGCAATAGGAGCGATTGCGATTTCATCATGGGTTTGGGCAAGATGG
genomic: CTGACCACTCTCCCGCTGCTAAGACAACCAATCCTCTTATACTCTGGCAGgtaggttgtt ... ttgattctagATTTATGCAATAGGAGCGATTGCGATTTCATCATGGGTTTGGGCAAGATGG
EST: gi|31465158|gb|CD407186.1|CD407186
EST:     CTGACCACTCTCCCGCTGCTAAGACAACCAATCCTCTTATACTCTGGCAG                         ATTTATGCAATAGGAGCGATTGCGATTTCATCATGGGTTTGGGCAAGATGG
genomic: CTGACCACTCTCCCGCTGCTAAGACAACCAATCCTCTTATACTCTGGCAGgtaggttgtt ... ttgattctagATTTATGCAATAGGAGCGATTGCGATTTCATCATGGGTTTGGGCAAGATGG
EST: gi|10846685|gb|BF069521.1|BF069521
EST:     CTGACCACTCTCCCGCTGCTAAGACAACCAATCCTCTTATACTCTGGCAG                         ATTTATGCAATAGGAGCGATTGCGATTTCATCATGGGTTTGGGCAAGATGG
genomic: CTGACCACTCTCCCGCTGCTAAGACAACCAATCCTCTTATACTCTGGCAGgtaggttgtt ... ttgattctagATTTATGCAATAGGAGCGATTGCGATTTCATCATGGGTTTGGGCAAGATGG
EST: gi|120496909|gb|EH225076.1|EH225076
EST:     CTGACCACTCTCCCGCTGCTAAGACAACCAATCCTCTTATACTCTGGCAG                         ATTTATGCAATAGGAGCGATTGCGTTTTCATCATGGGTTTGGGCAAGATGG
genomic: CTGACCACTCTCCCGCTGCTAAGACAACCAATCCTCTTATACTCTGGCAGgtaggttgtt ... ttgattctagATTTATGCAATAGGAGCGATTGCGATTTCATCATGGGTTTGGGCAAGATGG
EST: gi|19052894|gb|BM731561.1|BM731561
EST:     CTGACCACTCTCCCGCTGCTAAGACAACCAATCCTCTTATACTCTGGCAG                         ATTTATGCAATAGGAGCGATTGCGATTTCATCATGGGTTTGGGCAAGATGG
genomic: CTGACCACTCTCCCGCTGCTAAGACAACCAATCCTCTTATACTCTGGCAGgtaggttgtt ... ttgattctagATTTATGCAATAGGAGCGATTGCGATTTCATCATGGGTTTGGGCAAGATGG
EST: gi|8285236|gb|BE022795.1|BE022795
EST:     CTGACCACTCTCCCGCTGCTAAGACAACCAATCCTCTTATACTCTGGCAG                         ATTTATGCAATAGGAGCGATTGCGATTTCATCATGGGTTTGGGCAAGATGG
genomic: CTGACCACTCTCCCGCTGCTAAGACAACCAATCCTCTTATACTCTGGCAGgtaggttgtt ... ttgattctagATTTATGCAATAGGAGCGATTGCGATTTCATCATGGGTTTGGGCAAGATGG
EST: gi|17153803|gb|BM143736.1|BM143736
EST:     CTGACCACTCTCCCGCTGCTAAGACAACCAATCCTCTTATACTCTGGCAG                         ATTTATGCAATAGGAGCGATTGCGATTTCATCATGGGTTTGGGCAAGATGG
genomic: CTGACCACTCTCCCGCTGCTAAGACAACCAATCCTCTTATACTCTGGCAGgtaggttgtt ... ttgattctagATTTATGCAATAGGAGCGATTGCGATTTCATCATGGGTTTGGGCAAGATGG
EST: gi|254326045|gb|GR838926.1|GR838926
EST:     CTGACCACTCTCCCGCTGCTAAGACAACCAATCCTCTTATACTCTGGCAG                         ATTTATGCAATAGGAGCGATTGCGATTTCATCATGGGTTTGGGCAAGATGG
genomic: CTGACCACTCTCCCGCTGCTAAGACAACCAATCCTCTTATACTCTGGCAGgtaggttgtt ... ttgattctagATTTATGCAATAGGAGCGATTGCGATTTCATCATGGGTTTGGGCAAGATGG
EST: gi|209720464|gb|BW674659.1|BW674659
EST:     CTGACCACTCTCCCGCTGCTAAGACAACCAATCCTCTTATACTCTGGCAG                         ATTTATGCAATAGGAGCGATTGCGATTTCATCATGGGTTTGGGCAAGATGG
genomic: CTGACCACTCTCCCGCTGCTAAGACAACCAATCCTCTTATACTCTGGCAGgtaggttgtt ... ttgattctagATTTATGCAATAGGAGCGATTGCGATTTCATCATGGGTTTGGGCAAGATGG
EST: gi|7590541|gb|AW706291.1|AW706291
EST:     CTGACCACTCTCCCGCTGCTAAGACAACCAATCCTCTTATACTCTGGCAG                         ATTTATGCAATAGGAGCGATTGCGATTTCATCATGGGTTTGGGCAAGATGG
genomic: CTGACCACTCTCCCGCTGCTAAGACAACCAATCCTCTTATACTCTGGCAGgtaggttgtt ... ttgattctagATTTATGCAATAGGAGCGATTGCGATTTCATCATGGGTTTGGGCAAGATGG
EST: gi|5760614|gb|AI965977.1|AI965977
EST:     CTGACCACTCTCCCGCTGCTAAGACAACCAATCCTCTTATACTCTGGCAG                         ATTTATGCAATAGGAGCGATTGCGATTTCATCATGGGTTTGGGCAAGATGG
genomic: CTGACCACTCTCCCGCTGCTAAGACAACCAATCCTCTTATACTCTGGCAGgtaggttgtt ... ttgattctagATTTATGCAATAGGAGCGATTGCGATTTCATCATGGGTTTGGGCAAGATGG
EST: gi|15288082|gb|BI471973.1|BI471973
EST:     CTGACCACTCTCCCGCTGCTAAGACAACCAATCCTCTTATACTCTGGCAG                         ATTTATGCAATAGGAGCGATTGCGATTTCATCATGGGTTTGGGCAAGATGG
genomic: CTGACCACTCTCCCGCTGCTAAGACAACCAATCCTCTTATACTCTGGCAGgtaggttgtt ... ttgattctagATTTATGCAATAGGAGCGATTGCGATTTCATCATGGGTTTGGGCAAGATGG
EST: gi|31461991|gb|CD404019.1|CD404019
EST:     CTGACCACTCTCCCGCTGCTAAGACAACCAATCCTCTTATACTCTGGCAG                         ATTTATGCAATAGGAGCGATTGCGATTTCATCATGGGTTTGGGCAAGATGG
genomic: CTGACCACTCTCCCGCTGCTAAGACAACCAATCCTCTTATACTCTGGCAGgtaggttgtt ... ttgattctagATTTATGCAATAGGAGCGATTGCGATTTCATCATGGGTTTGGGCAAGATGG
EST: gi|120531431|gb|EH259564.1|EH259564
EST:     CCGCTGCTAAGACCACCAATCCTCCTTATACTTTGGCAG                         ATTTATGCCATAGGAGCGATTGCGATTTCATCATGGGTTTGGGCAAGATGG
genomic: CCGCTGCTAAGACAACCAATCCT-CTTATACTCTGGCAGgtaggttgtt ... ttgattctagATTTATGCAATAGGAGCGATTGCGATTTCATCATGGGTTTGGGCAAGATGG
EST: gi|27425752|gb|CA937272.1|CA937272
EST:     CTGACCACTCTCCCGCTGCTAAGACAACCAATCCTCTTATACTCTGGCAG                         ATTTATGCAATAGGAGCGATTGCGATTTCATCATGGGTTTGGGCAAGATGG
genomic: CTGACCACTCTCCCGCTGCTAAGACAACCAATCCTCTTATACTCTGGCAGgtaggttgtt ... ttgattctagATTTATGCAATAGGAGCGATTGCGATTTCATCATGGGTTTGGGCAAGATGG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

atatgatgttaagtccatttacattttctcacaagtttactttatttgattctagATTTATGCAATAGGAGCGATTGCGATTTCATCATGGGTTTGGGCAAGATGGAATGAGAGGAAGGGCCGAGGTGGGGGGTCTCCCAATGATGAGAGGGGTG
                                       ctttattt  CT-rich tract
                                   tttactttatttgatt  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gacaatatattcgtgaatgatgttgcataatcttgttatgcttcaatatgatgttaagtccatttacattttctcacaagtttactttatttgattctagATTTATGCAATAGGAGCGATTGCGATTTCATCATGGGTTTGGGCAAGATGGAATGAGAGGAAGGGCCGAGGTGGGGGGTCTCCCAATGATGAGAGGGGTG

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGAGG
- - - - - - -tgaatga
- - - - - - - - -tgatgtt
- - - - - - - - - - - -tgcataa
- - - - - - - - - - - - - - - - - - - tgcttca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ccattta