1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
...tcccgagactagtagtttccttattttcattgttgcattcctttacttggatggcttgtgtgtcttaaatggtataattgaaatgaaaatgttgtggcagGACCTGGATGGGCAAAATACTTTGTAGGCCCTCTTCAATTTGCTATATGCTTTGGCACAGTGATTGGTGGTCCTCTAGTGGGAGGAAAGAGCCTCAAG
species | Glycine max |
transcript | GLYMA20G33000.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: GCTTGGCCGTCGCCAGCTACGATTCAGGGACATGGCTAGAGATATTTTAG GACCTGGATGGGCAAAATACTTTGTAGGCCCTCTTCAATTTGCTATATGCTEST: gi|151398687|gb|EV268558.1|EV268558
genomic: GCTTGGCCGTCGCCAGCTACGATTCAGGGACATGGCTAGAGATATTTTAGgtgatttttc ... gttgtggcagGACCTGGATGGGCAAAATACTTTGTAGGCCCTCTTCAATTTGCTATATGCT
EST: GCTTGGCCGTCGCCAGCTACGATTCAGGGACATGGCTAGAGATATTTTAG GACCTGGATGGGCAAAATACTTTGTAGGCCCTCTTCAATTTGCTATATGCT
genomic: GCTTGGCCGTCGCCAGCTACGATTCAGGGACATGGCTAGAGATATTTTAGgtgatttttc ... gttgtggcagGACCTGGATGGGCAAAATACTTTGTAGGCCCTCTTCAATTTGCTATATGCT
cttggatggcttgtgtgtcttaaatggtataattgaaatgaaaatgttgtggcagGACCTGGATGGGCAAAATACTTTGTAGGCCCTCTTCAATTTGCTATATGCTTTGGCACAGTGATTGGTGGTCCTCTAGTGGGAGGAAAGAGCCTCAAG
tataattgaaatgaaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tcccgagactagtagtttccttattttcattgttgcattcctttacttggatggcttgtgtgtcttaaatggtataattgaaatgaaaatgttgtggcagGACCTGGATGGGCAAAATACTTTGTAGGCCCTCTTCAATTTGCTATATGCTTTGGCACAGTGATTGGTGGTCCTCTAGTGGGAGGAAAGAGCCTCAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA
- - - - - - - - - - - - - - - - -tgcattc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - tgtgtgt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aaatgaaa