Sequence
atgc intronic sequence ATGC exonic sequence...caattctactgttttgttgacttgaatgtcgaaggtgcaaatgtgagtattggtatacattttagtagtaatattaatattggtggcttggctgttacagGTTCTATGCATCTGAAGTTGTGGTTGCGTTGGAGTACCTACACATGATGGGGATAATATACCGTGATTTGAAGCCTGAAAACGTGCTCATAAGATCAGAC
Basic information
species | Glycine max |
transcript | GLYMA20G32860.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.agtattggtatacattttagtagtaatattaatattggtggcttggctgttacagGTTCTATGCATCTGAAGTTGTGGTTGCGTTGGAGTACCTACACATGATGGGGATAATATACCGTGATTTGAAGCCTGAAAACGTGCTCATAAGATCAGAC
tattaat putative branch site (score: 2)
tatacattttagtagt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
caattctactgttttgttgacttgaatgtcgaaggtgcaaatgtgagtattggtatacattttagtagtaatattaatattggtggcttggctgttacagGTTCTATGCATCTGAAGTTGTGGTTGCGTTGGAGTACCTACACATGATGGGGATAATATACCGTGATTTGAAGCCTGAAAACGTGCTCATAAGATCAGAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGATCA
- - tctactg
- - - - - - - tgttgac
- - - - - - - - - - - tgaatgt
- - - - - - - - - - - - - - - - aggtgca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ttggtgg