1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
gtgaggacagtgaattctaattcttttgctttcgttattggatttctcctttccctaaaagtatatagcaataatttctgcagTGAGAAGGATGCACAGATGTGTATATATCATGTTTCCTGGAAAACCAACTTCGGTTTTTGCTGTGAACTTGATGAGGATTGTGCACAAGAGCTTGCTG
species | Glycine max |
transcript | GLYMA20G32820.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: GCTCAGATTGTTGATTATTATGCTCAAATTTTGACCAAGGTCATGGGAAA TGAGAAGGATGCACAGATGTGTATATATCATGTTTCCTGGAAAACCAACTTEST: gi|10237069|gb|BE805957.1|BE805957
genomic: GCTCAGATTGTTGATTATTATGCTCAAATTTTGACCAAGGTCATGGGAAAgtgaggacag ... atttctgcagTGAGAAGGATGCACAGATGTGTATATATCATGTTTCCTGGAAAACCAACTT
EST: GCTCAGATTGTTGATTATTATGCTCAAATTTTGACCAAGGTCATGGGAAA TGAGAAGGATGCACAGATGTGTATATATCATGTTTCCTGGAAAACCAACTTEST: gi|193466806|gb|FK432157.1|FK432157
genomic: GCTCAGATTGTTGATTATTATGCTCAAATTTTGACCAAGGTCATGGGAAAgtgaggacag ... atttctgcagTGAGAAGGATGCACAGATGTGTATATATCATGTTTCCTGGAAAACCAACTT
EST: GCTCAGATTGTTGATTATTATGCTCAAATTTTGACCAAGGTCATGGGAAA TGAGAAGGATGCACAGATGTGTATATATCATGTTTCCTGGAAAACCAACTT
genomic: GCTCAGATTGTTGATTATTATGCTCAAATTTTGACCAAGGTCATGGGAAAgtgaggacag ... atttctgcagTGAGAAGGATGCACAGATGTGTATATATCATGTTTCCTGGAAAACCAACTT
ctttcgttattggatttctcctttccctaaaagtatatagcaataatttctgcagTGAGAAGGATGCACAGATGTGTATATATCATGTTTCCTGGAAAACCAACTTCGGTTTTTGCTGTGAACTTGATGAGGATTGTGCACAAGAGCTTGCTG
ccctaaa putative branch site (score: 3)
tttctgc putative PPT
taaaagtatatagcaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgaggacagtgaattctaattcttttgctttcgttattggatttctcctttccctaaaagtatatagcaataatttctgcagTGAGAAGGATGCACAGATGTGTATATATCATGTTTCCTGGAAAACCAACTTCGGTTTTTGCTGTGAACTTGATGAGGATTGTGCACAAGAGCTTGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCTT