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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CTGCCACACCAAAGCAAATCAGAGAGCTGATGAATGTTGATGGCCTCACAAATGATGAAGTCAAAAGCCATTTGCAGgtatgttagttatataagacgatttatatatcccaatttcccatcgtttggctatcaaatttggcttaactagtaaaatcataattggagtcttagctat...

Basic information

species Glycine max
transcript GLYMA20G32770.2
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA20G32770.2 (Glycine max), 5'ss of exon 4
lower sequence: LOC_Os02g22020.1 (Oryza sativa), 5'ss of exon 4
CTGCCACACCAAAGCAAATCAGAGAGCTGATGAATGTTGATGGCCTCACAAATGATGAAGTCAAAAGCCATTTGCAGgtatgttagttatataagacgatttata-tatcccaatttcccat-cgtttggctatcaaatttgg-cttaactagtaaaatcataattggagtcttagctat---------
  || || || ||||| ||| | ||||||||||| || ||||||||||| || || || ||||| ||||||||||||||  |  | |     |      |||    ||    || |    |  |    || || |   |||   | |  | |  |    | ||||| | || |    |           
TAGCGACGCCCAAGCAGATCCGGGAGCTGATGAAGGTGGATGGCCTCACCAACGACGAGGTCAAGAGCCATTTGCAGgtcagc-aatggcggacactactttgccctaatttaactcttaacacacgcggataacctgtttactcctctcgatcatgtccttaatttgtgtttcgcttggggttcacag

upper sequence: GLYMA20G32770.2 (Glycine max), 5'ss of exon 4
lower sequence: AT1G68670.1 (Arabidopsis thaliana), 5'ss of exon 4
CTGCCACACCAAAGCAAATCAGAGAGCTGATGAATGTTGATGGCCTCACAAATGATGAAGTCAAAAGCCATTTGCAGgtatgttagttatataagacgatttatatatcccaatttcccatcgtttggctatcaaatttggcttaactagtaaaatcataattggagtcttagctat-------
 ||| ||||||||||||||||| || |  ||||| ||||||||  | ||||| || ||||| ||||||||||| |||||  || | | ||          ||||| ||| ||| |||      || ||  || ||||      | |||   ||  || |||      | |  |  ||       
TTGCTACACCAAAGCAAATCAGGGATCACATGAAGGTTGATGGATTAACAAACGACGAAGTTAAAAGCCATTTACAGgttagtgattaatgattcttatgttata-atcacaagttcgtgaaatt-ggtaattaaatgaaatgttact--caagttcttaaccattttttgtgtaatatttcag

upper sequence: GLYMA20G32770.2 (Glycine max), 5'ss of exon 4
lower sequence: Vv01s0011g03110.t01 (Vitis vinifera), 5'ss of exon 4
CTGCCACACCAAAGCAAATCAGAGAGCTGATGAATGTTGATGGCCTCACAAATGATGAAGTCAAAAGCCATTTGCAGgtatgttagttatataagacgattta-tatatcccaatttcccatcgtttggctatcaaatt--tggcttaact-agta-aaatcataattggagtcttagctat
 ||| || |||||||| ||||| || |||||||| |||||||| || || ||||||||||||||||||||||| ||||| |||     |  |    |||  ||  | |  |    |     |  | |   | |||  ||  |   | | || ||||   ||| | || |||  ||  |    
TTGCTACCCCAAAGCAGATCAGGGAACTGATGAAGGTTGATGGGCTTACTAATGATGAAGTCAAAAGCCATTTACAGgtttgtataaaactttcctcgaagtagcaaaaactttatctttgttatgtcattttcattttggtaattcatcttagtatggatcctgat-ggatgctagg----

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|20812487|gb|BQ296965.1|BQ296965
EST:     TGATGAATGTTGATGGCCTCACAAATGATGAAGTCAAAAGCCATTTGCAG                         AAATACCGTTTGCACACTAGAAGGCCAATTCCCATGGTTCACAACAGTTCC
genomic: TGATGAATGTTGATGGCCTCACAAATGATGAAGTCAAAAGCCATTTGCAGgtatgttagt ... ttttggacagAAATACCGTTTGCACACTAGAAGGCCAATTCCCATGGTTCACAACAGTTCC