Sequence
atgc intronic sequence ATGC exonic sequence...ccagtaccatagcatcattttgttgcactttattttgctctcaagaatgggcttacataataactttataatgtgactcacatcacatgattttctgtagATGCATATGTGGGGACATGGATCCCAGTATAGGAAAGGATCGAATTCATTGAGAGGGTCAAAAGCAGGTTCTCTAATGCTGAGGCTACCCTGCTATTGCT
Basic information
species | Glycine max |
transcript | GLYMA20G32750.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA20G32750.1 (Glycine max), 3'ss of exon 2
lower sequence: Vv01s0011g03100.t01 (Vitis vinifera), 3'ss of exon 1
--ccagtac-catagcatcattttgttgcactttattttgctctcaagaatgggcttacataataactttataatgtgactcacatcacatgattttctgtagATGCATATGTGGGGACATGGATCCCAGTATAGGAAAGGATCGAATTCATTGAGAGGGTCAAAAGCAGGTTCTCTAATGCTGAGGCTACCCTGCTATTGCT
| | | | || | | ||| | || | || | || ||| |||| |||| | ||| | || || | || ||||||||||||||||||||||| |||||||| || || || || || || | || || |||||| |||| ||| ||| || || ||| | || || || || |
ttatattcctcggagaagtaatttagggaacct-atccaggga--aaacatgattttacctaattattttttcatctggtgtatcctgtatctatttctgtagATGCATATGTGGGGTCATGGATCACAATACAGAAAGGGCCCGGAGTCGTTAAGAGGGACAAAGCCAGCTTCATCCATTCTTAGGTTGCCATGTTACTGTT atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.aatgggcttacataataactttataatgtgactcacatcacatgattttctgtagATGCATATGTGGGGACATGGATCCCAGTATAGGAAAGGATCGAATTCATTGAGAGGGTCAAAAGCAGGTTCTCTAATGCTGAGGCTACCCTGCTATTGCT
ttttctgt CT-rich tract
ttacataataacttta TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
ccagtaccatagcatcattttgttgcactttattttgctctcaagaatgggcttacataataactttataatgtgactcacatcacatgattttctgtagATGCATATGTGGGGACATGGATCCCAGTATAGGAAAGGATCGAATTCATTGAGAGGGTCAAAAGCAGGTTCTCTAATGCTGAGGCTACCCTGCTATTGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG
- - - - - - - - - - - -tgcactt
- - - - - - - - - - - - - - - - - -tgctctc
- - - - - - - - - - - - - - - - - - - - - - - - - gcttaca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - cacatca