1 5' 3' | 2 5' 3' | 3 5' 3' |
...atgcaataggaaaagcggctgcaaatgtagtgtgtatttgttagcagttaggaatgagaaagatggttcgggttggtactaattattttttctgcaacagGCAAGGATGATGAGAAAAGAATGAGTCTCAAACTGGAAAGAGTCAA
species | Glycine max |
transcript | GLYMA20G32710.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: AAGAGATGGCAAGCAACTTGAAGTTTTAGGTTTCTACAATCCCGTCGCAG GCAAGGATGATGAGAAAAGAATGAGTCTCAAACTGGAAAGAGTCAA
genomic: AAGAGATGGCAAGCAACTTGAAGTTTTAGGTTTCTACAATCCCGTCGCAGgttatgtatt ... tctgcaacagGCAAGGATGATGAGAAAAGAATGAGTCTCAAACTGGAAAGAGTCAA
agttaggaatgagaaagatggttcgggttggtactaattattttttctgcaacagGCAAGGATGATGAGAAAAGAATGAGTCTCAAACTGGAAAGAGTCAA
tactaat putative branch site (score: 1)
ttattttttct CT-rich tract
tactaattattttttc TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| atgcaataggaaaagcggctgcaaatgtagtgtgtatttgttagcagttaggaatgagaaagatggttcgggttggtactaattattttttctgcaacagGCAAGGATGATGAGAAAAGAATGAGTCTCAAACTGGAAAGAGTCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
atgcaat
- - - - - - - -cggctgc
- - - - - - - - - - - - - - -gtgtgta
- - - - - - - - - - - - - - - - - - - - - - - - - -gaatgag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gatggtt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gggttgg