Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTGCAGGCACCCAAAGTCAAGCTAGGGGACAAAATTACAGCCCTTCAGCAAATTGTGTCTCCATTTGGAAAGgttactacacattgcactaacacctctcgctttttcgtttcctcttctttataaatatatataattaacagtgctctacttttctcactacctacttcattatgatcaatttttttgttgaatttcag

Basic information

species Glycine max
transcript GLYMA20G32520.1
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA20G32520.1 (Glycine max), 5'ss of exon 4
lower sequence: Vv01s0010g02070.t01 (Vitis vinifera), 5'ss of exon 4
GTGCAGGCACCCAAAGTCAAGCTAGGGGACAAAATTACAGCCCTTCAGCAAATTGTGTCTCCATTTGGAAAGgttactacacattgcactaacacctctcgc-------tttttcgtttcctcttctttataaatatatataa-ttaacagtgctctacttttctcactacctacttcattatgatcaatttttttgttgaatttcag
 ||||||| || ||||||||| | || || |  || ||||| ||||||||||||||||| || |||||||||||| | ||| |      |||    | |  |       ||||   |||||| || | ||| | | | | ||| ||||| |  |||  ||| | |  | |                                      
ATGCAGGCCCCGAAAGTCAAGATTGGAGATAGGATCACAGCTCTTCAGCAAATTGTGTCGCCTTTTGGAAAGgttccaacaaaagcacttaatttgtttaaccagaactttttctttttccttttttgtattattttctttaaattaactgaactc--cttatatttccag-------------------------------------