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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TAGGGGTAAAGTTGTTCCCGGGGTAATGGATTCTGCTGTTGCAAAGCACTTGTCTCAGGCATATGGAACATTAGCCGAGCGTGTGGCTACCATTGCTCAGgtttgcttgtattacttatatttcttattgttagttttgttgagcaacaaacatatacaagtgcattttaatgtaaaatagaatgtgtgattagtaactg...

Basic information

species Glycine max
transcript GLYMA20G32390.1
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA20G32390.1 (Glycine max), 5'ss of exon 5
lower sequence: Vv13s0019g04730.t01 (Vitis vinifera), 5'ss of exon 5
TAGGGGTAAAGTTGTTCCCGGGGTAATGGATTCTGCTGTTGCAAAGCACTTGTCTCAGGCATATGGAACATTAGCCGAGCGTGTGGCTACCATTGCTCAGgtttgcttgtattacttatatttcttattgttagttttgttgagcaacaaacatatacaagtgcattttaatgtaaaatagaatgtgtgattagtaactg----
 || ||||||||||| || || ||||||||  ||||||  |||||||| |||||||| |||||||| ||  | || || || |||||| | || |||||||| ||    ||   | |   ||  ||||   ||||| ||   |  |||||   |       |   ||| ||       |    | | |  ||   ||       
CAGTGGTAAAGTTGTCCCAGGAGTAATGGACACTGCTGCAGCAAAGCATTTGTCTCATGCATATGGTACTATGGCTGATCGAGTGGCTGCTATAGCTCAGgtctgtacatacaccgtgc-ttgattatg--tagttgtggcaa-taacaagatttctttcatttttttgaaacctcgtttctttatttctttcaaaatgaagtt
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|7588078|gb|AW703881.1|AW703881
EST:     TGTCTCAGGCATATGGAACATTAGCCGAGCGTGTGGCTACCATTGCTCAG                         AATGAAAATGTGGGTAAACGACTTGCCCACGGTTACCCTTATCTAGAGGCA
genomic: TGTCTCAGGCATATGGAACATTAGCCGAGCGTGTGGCTACCATTGCTCAGgtttgcttgt ... ttctgtttagAATGAAAATTTGGGTAAACGACTTGCCCACGGTTACCCTTATCTGGAGGCA