Sequence
atgc intronic sequence ATGC exonic sequence...acaaaaaaatgaagagatttcttgttctctctttctctctgtgcattcccttgtgtgtgaaactttctcttattaatatataaattttgtttattggcagAATCTTCTTGGTATTCTCCTACCAGTGCAATATTAAACAGATATGGATTCCATCAAAGGAGGGTCACGACACATACAAATCCAATCAAACCTGTTTGTGA
Basic information
species | Glycine max |
transcript | GLYMA20G32180.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|298173267|gb|HO016603.1|HO016603EST: GCGACTCATTTCAATCTTCTCAAGACAAACTCATCACCCCATTACTCAAG AATCTTCTTGGTATTCTCCTACCAGTGCAATATTAAACAGATATGGATTCC
genomic: GCGACTCATTTCAATCTTCTCAAGACAAACTCATCACCCCATTACTCAAGgcatgtcctt ... ttattggcagAATCTTCTTGGTATTCTCCTACCAGTGCAATATTAAACAGATATGGATTCC
EST:
gi|298182972|gb|HO028235.1|HO028235EST: GCGACTCATTTCAATCTTCCCAAGACAAACTCATCACCCCATTACTCAAG AATCTTCTTGGTATTCTCCTACCAGTGCAATATTAAACAGATATGGATTCC
genomic: GCGACTCATTTCAATCTTCTCAAGACAAACTCATCACCCCATTACTCAAGgcatgtcctt ... ttattggcagAATCTTCTTGGTATTCTCCTACCAGTGCAATATTAAACAGATATGGATTCC
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.ttcccttgtgtgtgaaactttctcttattaatatataaattttgtttattggcagAATCTTCTTGGTATTCTCCTACCAGTGCAATATTAAACAGATATGGATTCCATCAAAGGAGGGTCACGACACATACAAATCCAATCAAACCTGTTTGTGA
tattaat putative branch site (score: 2)
ttttgttt putative PPT
tgaaactttctcttat TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
acaaaaaaatgaagagatttcttgttctctctttctctctgtgcattcccttgtgtgtgaaactttctcttattaatatataaattttgtttattggcagAATCTTCTTGGTATTCTCCTACCAGTGCAATATTAAACAGATATGGATTCCATCAAAGGAGGGTCACGACACATACAAATCCAATCAAACCTGTTTGTGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG
- aaaaaaa
- - - - - - - - - - cttgttc
- - - - - - - - - - - - - - - - - - ctctgtg
- - - - - - - - - - - - - - - - - - - - - -cattccc
- - - - - - - - - - - - - - - - - - - - - - - - - - gtgtgtg