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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GAGAAAGAATTTGAATCCTGAGTGGAATGAGAAGTTCAAGCTTGTTGTAAAGGATCCTCAATCTCAAGTTCTCCAATTACAAGTTTATGACTGGGACAAGgttttcctcatcttttttctagttacttgttcaattttgacagaaaaacttaacataaaaatcctagctataatagttatcattgactaagctcttaagg...

Basic information

species Glycine max
transcript GLYMA20G32110.1
intron # 8
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA20G32110.1 (Glycine max), 5'ss of exon 8
lower sequence: Vv13s0019g04450.t01 (Vitis vinifera), 5'ss of exon 9
GAGAAAGAATTTGAATCCTGAGTGGAATGAGAAGTTCAAGCTTGTTGTAAAGGATCCTCAATCTCAAGTTCTCCAATTACAAGTTTATGACTGGGACAAGgttttcctcatcttttttctagttacttgttcaattttgacagaaaaacttaacataaaaatcctagctataatagttatcattgactaagctcttaagg---
||| ||||| ||||| |||||||||||||||||||| |||||  | |||| |||||| ||| |||||||||| ||  |  | ||||||||||||||||||||| ||  |   || ||  |  ||  ||| |  || |  | || |   |  ||  ||  |||     | || | |   |   |   ||  ||| | ||     
GAGGAAGAACTTGAACCCTGAGTGGAATGAGAAGTTTAAGCTCATAGTAAGGGATCCCCAAGCTCAAGTTCTTCAGCTCTATGTTTATGACTGGGACAAGgttatctcctgtttcttcattttttattgcttcatat--aaaggatttccaaaattatcaatgaagtcaatgagaaa-aaggtcatctgtgctttcaaatcgg