Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|193579894|gb|FK533541.1|FK533541EST: TTGCGACAGAGAAG GACTGGAATTGCATACATATCAAATGTGGCAGTCCGAG-AAAATTTAGGCG
genomic: TTGCGACAGAGAAGgtgagttgaa ... aatactgtagGACTGGAATTGCATACATATCAAATGTGGCAGTCCGAGAAAAATTTAGGCG
EST:
gi|193540177|gb|FK495647.1|FK495647EST: AGGGACCATTGCGACAGAGAAG GACTGGAATTGCATACATATCAAATGTGGCAGTCCGAGAAAAATTTAGGCG
genomic: AGGGACCATTGCGACAGAGAAGgtgagttgaa ... aatactgtagGACTGGAATTGCATACATATCAAATGTGGCAGTCCGAGAAAAATTTAGGCG
EST:
gi|207807782|gb|GD778131.1|GD778131EST: GATACTGTTGCAGACTTTCTGCCTAGGAAGGGACCATTGCGACAGAGAAG GACTGGAATTGCATACATATCAAATGTGGCAGTCCGAGAAAAATTTA
genomic: GATACTGTTGCAGACTTTCTGCCTAGGAAGGGACCATTGCGACAGAGAAGgtgagttgaa ... aatactgtagGACTGGAATTGCATACATATCAAATGTGGCAGTCCGAGAAAAATTTA
EST:
gi|208126091|gb|GD926035.1|GD926035EST: GATACTGTTGCAGACTTTCTGCCTAGGAAGGGACCATTGCGACAGAGAAG GACTGGAATTGCATACATATCAAATGTGGCAGTCCGAGAAAAATTTAGGCG
genomic: GATACTGTTGCAGACTTTCTGCCTAGGAAGGGACCATTGCGACAGAGAAGgtgagttgaa ... aatactgtagGACTGGAATTGCATACATATCAAATGTGGCAGTCCGAGAAAAATTTAGGCG
EST:
gi|193677454|gb|FK619668.1|FK619668EST: TTGCGACAGAGAAG GACTGGAATTGCATACATATCAAATGTGGCAGTCCGAGAAAAATTTAGGCG
genomic: TTGCGACAGAGAAGgtgagttgaa ... aatactgtagGACTGGAATTGCATACATATCAAATGTGGCAGTCCGAGAAAAATTTAGGCG
EST:
gi|213602030|gb|DB976249.1|DB976249EST: ATACTGTTGCAGAC-TTCATGCCTAGGAAGGGACCATTGCGACAGAGAAG GACTGGAATTGCATACATATCAAATGTGGCAGTCCGAGAAAAATTTAGGCG
genomic: ATACTGTTGCAGACTTTC-TGCCTAGGAAGGGACCATTGCGACAGAGAAGgtgagttgaa ... aatactgtagGACTGGAATTGCATACATATCAAATGTGGCAGTCCGAGAAAAATTTAGGCG
EST:
gi|193317855|gb|FK284593.1|FK284593EST: ATACTGTTGCAGACTTTCTGCCTAGGAAGGGGACCATTGCGACAGAGAAG GACTGGAATTGCATACATATCAAATGTGGCAGTCCGAG-AAAATTTAGGCG
genomic: ATACTGTTGCAGACTTTCTGCCTAGGAA-GGGACCATTGCGACAGAGAAGgtgagttgaa ... aatactgtagGACTGGAATTGCATACATATCAAATGTGGCAGTCCGAGAAAAATTTAGGCG
EST:
gi|193582689|gb|FK536041.1|FK536041EST: TTGCGACAGAGAAG GACTGGAATTGCATACATATCAAATGTGGCAGTCCGAGAAAAATTTAGGCG
genomic: TTGCGACAGAGAAGgtgagttgaa ... aatactgtagGACTGGAATTGCATACATATCAAATGTGGCAGTCCGAGAAAAATTTAGGCG
EST:
gi|193657670|gb|FK607213.1|FK607213EST: TTGCGACAGAGAAG GTACTTGGAATTGCATACATATCAAATGTGGCAGTCCGAGAAAAATTTAGG
genomic: TTGCGACAGAGAAGgtgagttgaa ... aatactgtagG-AC-TGGAATTGCATACATATCAAATGTGGCAGTCCGAGAAAAATTTAGG
EST:
gi|208166231|gb|GD965465.1|GD965465EST: GATACTGTTGCAGACTTTCTGCCTAGGAAGGGACCATTGCGACAGAGAAG GACTGGAATTGCA
genomic: GATACTGTTGCAGACTTTCTGCCTAGGAAGGGACCATTGCGACAGAGAAGgtgagttgaa ... aatactgtagGACTGGAATTGCA
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.taactgatgaatttgtgctgatggctgtaattttttcttcttcaaaatactgtagGACTGGAATTGCATACATATCAAATGTGGCAGTCCGAGAAAAATTTAGGCGGAAGGGAATAGCTAAACACTTGGTTGCAAAGGCAGAATCACAAGCTAGA
tgctgat putative branch site (score: 3)
taattttttcttcttc TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
tacatggccatgttggagtatgatattcatggtttatgcttcacttaactgatgaatttgtgctgatggctgtaattttttcttcttcaaaatactgtagGACTGGAATTGCATACATATCAAATGTGGCAGTCCGAGAAAAATTTAGGCGGAAGGGAATAGCTAAACACTTGGTTGCAAAGGCAGAATCACAAGCTAGA
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- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAAGCT