1 5' 3' |
CATGGCCCTCATTTCCGGCGACGGCTCCTCCGACCTCGTCGACCAGGCCGTCGCCATGGCCTTTGGTCAGTGCCGCAGCACCAATTATGTCCGCATTCAGgtattttattattattattattgtgggtcttgttgtcattagttatcaaattaaaagaaaatatttattgtgaacagaagagtgaaattttttttaattt...
species | Glycine max |
transcript | GLYMA20G31990.1 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: TCGCCATGGCCTTTGGTCAGTGCCGCAGCACCAATTATGTCCGCATTCAG GCAAATGGGTCAAGTATGGGGCGATGTGGACCCAATGTGGATACAGATTCAEST: gi|193711723|gb|FK648746.1|FK648746
genomic: TCGCCATGGCCTTTGGTCAGTGCCGCAGCACCAATTATGTCCGCATTCAGgtattttatt ... attgtgacagGCAAATGGGTCAAGTATGGGGCGATGTGGACCCAATGTGGATACAGATTCA
EST: TCGCCATGGCCTTTGGTCAGTGCCGCAGCACCAATTATGTCCGCATTCAG GCAA-TGG-TCAAGTATGGGEST: gi|15337675|gb|BI498331.1|BI498331
genomic: TCGCCATGGCCTTTGGTCAGTGCCGCAGCACCAATTATGTCCGCATTCAGgtattttatt ... attgtgacagGCAAATGGGTCAAGTATGGG
EST: TCGCCATGGCCTTTGGTCAGTGCCGCAGCACCAATTATGTCCGCATTCAG GCAAATGGGTCAAGTATGGGGCGATGTGGACCCAATGTGGATACAGATTCA
genomic: TCGCCATGGCCTTTGGTCAGTGCCGCAGCACCAATTATGTCCGCATTCAGgtattttatt ... attgtgacagGCAAATGGGTCAAGTATGGGGCGATGTGGACCCAATGTGGATACAGATTCA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CATGGCCCTCATTTCCGGCGACGGCTCCTCCGACCTCGTCGACCAGGCCGTCGCCATGGCCTTTGGTCAGTGCCGCAGCACCAATTATGTCCGCATTCAGgtattttattattattattattgtgggtcttgttgtcattagttatcaaattaaaagaaaatatttattgtgaacagaagagtgaaattttttttaattt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ttgtggg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aaagaaaa