1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
...cttttttctctttaacttctgatattgttgaatttgcattttcgatattgggtttttcgttggaattgttcttgatggttttgttttcatgtaattgcagACTCCAAAAGGAATTAATGACTCTCATG
species | Glycine max |
transcript | GLYMA20G31920.2 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: AGACGTGCATTTCGCCAGAGACAGACACATGAG ACTCCAAAAGGAATTAATGACTCTCATG
genomic: AGACGTGCATTTCGCCAGAGACAGACACATGAGgtgagttgta ... gtaattgcagACTCCAAAAGGAATTAATGACTCTCATG
tattgggtttttcgttggaattgttcttgatggttttgttttcatgtaattgcagACTCCAAAAGGAATTAATGACTCTCATG
tcttgat putative branch site (score: 4)
ttttgtttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| cttttttctctttaacttctgatattgttgaatttgcattttcgatattgggtttttcgttggaattgttcttgatggttttgttttcatgtaattgcagACTCCAAAAGGAATTAATGACTCTCATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA
- - - - - - - acttctg
- - - - - - - - - - - - -tgttgaa
- - - - - - - - - - - - - - - - - tgcattt
- - - - - - - - - - - - - - - - - - - - - - - - -gggtttt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - cttgatg