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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagcacaaaccactcattctgcttttgttgttggtctactttttttttttctattgaactgatcataaagtttaatgtgaaatttacagATAATCTTGTTGGTGGGAACAAAGCTACAAATGATCATAACTGAGATGGCACTAAGGATTCAAGATAGGGGGGAAGTCGTCAAGGGTGCACCTGTGGTTG

Basic information

species Glycine max
transcript GLYMA20G31910.1
intron # 10
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA20G31910.1 (Glycine max), 3'ss of exon 10
lower sequence: Vv13s0019g04070.t01 (Vitis vinifera), 3'ss of exon 10
--------------gtaagcacaaaccactcattctgcttttgttgttggtctac---tttttttttttctattga-------actgatcataaagtt--------taatgtgaaatttacagATAATCTTGTTGGTGGGAACAAAGCTACAAATGATCATAACTGAGATGGCACTAAGGATTCAAGATAGGGGGGAAGTCGTCAAGGGTGCACCTGTGGTTG
               | |  | |   || |  | | |  || ||| |  || | |   | | |  ||||   ||||       |  ||| | ||  ||         ||||||||  || |||||| |  | ||||||||||||||||||||| |||| ||||||||  ||| | | ||||||  ||| || || |  || || |||||| ||||  | ||||
gtaagcacaatttcattacaatacttcatttctccagaattggttttcagttttcacatatatgattttgggttgagggcaataaggatgacaagtttggttgaatcaatgtgaatgttgcagATACTGCTCTTGGTGGGAACAAAGCTACAAGTGATAATAACTGAATTGGGATTGAGGATTGCAGAGAGAGGTGTTGTGGTGAAGGGTACACCAATAGTTG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tctactttttttttttctattgaactgatcataaagtttaatgtgaaatttacagATAATCTTGTTGGTGGGAACAAAGCTACAAATGATCATAACTGAGATGGCACTAAGGATTCAAGATAGGGGGGAAGTCGTCAAGGGTGCACCTGTGGTTG
                              ataaagtttaatgtga  TA-rich tract