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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGACATAAATGAGGATTCTATGCTTAGATGCCCATTCTTGAGGAACATCAATGAGCCTACTAACTTCTCATTCTCTTCACCTTTGGCTTTACCAATGCCTgtaagttatcctccatagttgacataattctcattttatcttttattttagcctgcatgtatgggttttgctgtgaccttccatgtttattgagaatgat...

Basic information

species Glycine max
transcript GLYMA20G31850.3
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA20G31850.3 (Glycine max), 5'ss of exon 2
lower sequence: LOC_Os10g43060.1 (Oryza sativa), 5'ss of exon 2
---AGACATAAATGAGGATTCTATGCTTAGATGCCCATTCTTGAGGAACATCAATGAGCCTACTAACTTCTCATTCTCTTCACCTTTGGCTTTACCAATGCCTgtaagttatcctccata-gttgacataattctcattttatcttttattttagcctgcatgtatgggttttgctgtgacctt-ccatgtttattgagaatgat----
     ||       |  ||   ||    |||||||||||| | |||||||||||||||||||| |  || |||||||| ||  | ||   ||| ||  | ||||||||   |   || |   |   |||||| || ||   || |||  |   |   || |||||| |    |||  |  |    | || |   |||    |  |    
AGACAACTCCGTCCAACATGGAATTGAAAGATGCCCATTCCTAAGGAACATCAATGAGCCTACAAGTTTTTCATTCTCGTC--CGTTAATTTT-CCTGTTCCTgtaagccctttaccttccatcctcataat-cttatcgcatgtttc-tgaaaaattggatgtattgtggatgccattgctcaactatatcatttgctgcttgtaaag

upper sequence: GLYMA20G31850.3 (Glycine max), 5'ss of exon 2
lower sequence: GRMZM2G394410_T01 (Zea mays), 5'ss of exon 2
---AGACATAAATGAGGATTCTATGCTTAGATGCCCATTCTTGAGGAACATCAATGAGCCTACTAACTTCTCATTCTC-TTCACCTTTGGCTTTACCAATGCCTgtaagttatcctccatagttgacataattctcattttatcttttattttagcctgcatgtat---gggttttgctgtgaccttccatgtttattgagaatgat-
   |  | |     |  |    ||    || ||||||||| |||||||||||||||||||||| |  || || ||||| | |  |     |  ||     |  ||    |||    |  |   |      ||| |||    |||  ||  || ||    |  || |   ||      |  |||  |    |||||  ||    |||  
AGAAACCGTCGTCCAACAAGGAATTGAAAGGTGCCCATTCCTGAGGAACATCAATGAGCCTACAAGTTTTTCCTTCTCGTCCGTCAACTTCCCTATTCCCgtatgccctttacttcctgttcctctttacattatcacaccatccatttcttaagatcactggtgttctggaacgatcgctgaattctattgtttgctgcttgtgaag

upper sequence: GLYMA20G31850.3 (Glycine max), 5'ss of exon 2
lower sequence: AT4G25030.1 (Arabidopsis thaliana), 5'ss of exon 2
AGACATAAATGAGGATTC---TATGCTTAGATGCCCATTCTTGAGGAACATCAATGAGCCTACTAACTTCTCATTCTCTTCACCTTTGGCTTTACCAATGCCTgtaagttatcctccatagttgacataattctcattttatcttttattttagcctgcatgtatgggttttgctgtgaccttccatgtttattgagaatgat
   |||   |    | |     || ||  ||||||| ||||||||||||||||||||||| |||||| |||| ||||||||| | ||| |||| || || ||||||||| | | ||  | | |    | | || ||| ||  | ||| || |||  |         | | |||      |    ||| | ||| |        
---CATGGCTTCTCAGTTGAACATTCTCCGATGCCCGTTCTTGAGGAACATCAATGAGCCCACTAACCTCTCTTTCTCTTCATCCTTGCCTTTTCCCATCCCTgtaagtaaccgtctgttggt----tcactc-catattgacatttcttatagatt-------ctgatcttgt-----ctcatcatatatatag--------

upper sequence: GLYMA20G31850.3 (Glycine max), 5'ss of exon 2
lower sequence: Vv13s0019g03990.t01 (Vitis vinifera), 5'ss of exon 2
--AGACATAAATGAGGATTCTATGCTTAGATGCCCATTCTTGAGGAACATCAATGAGCCTACTAACTTCTCATTCTCTTCACCTTTGGCTTTACCAATGCCTgtaagttatcctccatagttgacataattctcattttatcttttattttagcctgcatgtatgggttttgctgtgacct---tccatgtttattgagaatgat
   | | |   | || |    || |||||||| ||||| ||||||||||||||||| || || || ||||| ||  | |||||  ||||||| ||||||||||||||||||      |  |        ||  ||  | |  || |  ||     |      ||  | |||  | | | ||   |||   |   || |   |   
TCTGCCTTC--TCAGCAGGACATACTTAGATGTCCATTTTTGAGGAACATCAATGAACCCACAAATTTCTCCTTTGCCTCACCCATGGCTTTCCCAATGCCTgtaagttatttcttctgctcacttccctttgcacatgaagttattcttctaaatattgccataagattttatttcatctggatcccaatgagttcatggt---

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|192299721|gb|FG993301.1|FG993301
EST:     ATGAGCCTACTAACTTCTCATTCTCTTCACCTTTGGCTTTACCAATGCCT                         GTTCGTGGAGCTAAAGGTCCAATTTTTGAAGATGGTCCCAATTTTGATTTG
genomic: ATGAGCCTACTAACTTCTCATTCTCTTCACCTTTGGCTTTACCAATGCCTgtaagttatc ... tcttactcagGTTCGTGGAGCTAAAGGTCCAATTTTTGAAGATGGTCCCAATTTTGATTTG
EST: gi|193420751|gb|FK390926.1|FK390926
EST:     ATTCTCTTCACCTTTGGCTTTACCAATGCCT                         GTTCGTGGAGCTAAAGGTCCAATTTTTGAAGATGGTCCCAATTTTGATTTG
genomic: ATTCTCTTCACCTTTGGCTTTACCAATGCCTgtaagttatc ... tcttactcagGTTCGTGGAGCTAAAGGTCCAATTTTTGAAGATGGTCCCAATTTTGATTTG