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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...tcagaattctgagaattgaacttactgaatcctccacagtttgtctcttaacccaaaattccataaagtattcttatgtatcccttccctccatttgcagGTTTTTTGAAGCAGAAGAATGGACTTCTTTACTAGAGACATAAATGAGGATTCTATGCTTAGATGCCCATTCTTGAGGAACATCAATGAGCCTACTAACT

Basic information

species Glycine max
transcript GLYMA20G31850.1
intron # 1
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|192299721|gb|FG993301.1|FG993301
EST:     TGTTTCTGCACTGAGGCAATTTGGATCAAATTTTATCATCTTTAGTTTGG                         GTTTTTTGAAGCAGAAGAATGGACTTCTTTACTAGAGACATAAATGAGGAT
genomic: TGTTTCTGCACTGAGGCAATTTGGATCAAATTTTATCATCTTTAGTTTGGgtgattcgcc ... ccatttgcagGTTTTTTGAAGCAGAAGAATGGACTTCTTTACTAGAGACATAAATGAGGAT






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tcttaacccaaaattccataaagtattcttatgtatcccttccctccatttgcagGTTTTTTGAAGCAGAAGAATGGACTTCTTTACTAGAGACATAAATGAGGATTCTATGCTTAGATGCCCATTCTTGAGGAACATCAATGAGCCTACTAACT
 tcttaac  putative branch site (score: 2)
                         ttcttatgtatccctt  putative PPT
                 ataaagtattcttat  TA-rich tract