1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
...aacgtgttgtgtcctataatttataaaatttgccatattcccgtatctgtaatgtatcttatccatgtcccatatcgaatttgtgctttcctagctaaagATGACATCTACCTTGCATTCCAACAAGGTGTTGGACATATCTGGATCCTCATAAGTACTGTCGTAATGTTATGCTCTGATCTCAACCTGGCTTGACATGA
species | Glycine max |
transcript | GLYMA20G31840.2 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: ATCATCCTTTTCAACATCCGGGATTAAGAAAAACCAGTAGACATGATCAG ATGACATCTACCTTGCATTCCAACAAGGTGTTGGACATATCTGGATCCTCAEST: gi|58020292|gb|CX707034.1|CX707034
genomic: ATCATCCTTTTCAACATCCGGGATTAAGAAAAACCAGTAGACATGATCAGgttggttatt ... ctagctaaagATGACATCTACCTTGCATTCCAACAAGGTGTTGGACATATCTGGATCCTCA
EST: ATCATCCTTTTCAACATCCGGGATTAAGAAAAACCAGTAGACATGATCAG ATGACATCTACCTTGCATTCCAACAAGGTGTTGGACATATCTGGATCCTCAEST: gi|13312187|gb|BG405847.1|BG405847
genomic: ATCATCCTTTTCAACATCCGGGATTAAGAAAAACCAGTAGACATGATCAGgttggttatt ... ctagctaaagATGACATCTACCTTGCATTCCAACAAGGTGTTGGACATATCTGGATCCTCA
EST: ATCATCCTTTTCAACATCCGGGATTAAGAAAAACCAGTAGACATGATCAGCTAAAG
genomic: ATCATCCTTTTCAACATCCGGGATTAAGAAAAACCAGTAGACATGAT---C---AGgttggttatt ... ctagc
tctgtaatgtatcttatccatgtcccatatcgaatttgtgctttcctagctaaagATGACATCTACCTTGCATTCCAACAAGGTGTTGGACATATCTGGATCCTCATAAGTACTGTCGTAATGTTATGCTCTGATCTCAACCTGGCTTGACATGA
tgctttcct CT-rich tract
tatcttat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| aacgtgttgtgtcctataatttataaaatttgccatattcccgtatctgtaatgtatcttatccatgtcccatatcgaatttgtgctttcctagctaaagATGACATCTACCTTGCATTCCAACAAGGTGTTGGACATATCTGGATCCTCATAAGTACTGTCGTAATGTTATGCTCTGATCTCAACCTGGCTTGACATGA
- - tgttgtg
- - - - - - - - - - - - - - - tgccata
- - - - - - - - - - - - - - - - - - - - - gtatctg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgtccca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgctttc