1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
...ttatccaactaagttcttagtttcttttattattgggagaatttgtatctgtgctgcaacaactttgtgtgtaatagttccatgttatggggggtttcagGCAAGAAGATCCTTGCGTGGCTTGAGAGGTTTGTCGAGGTTGAAAACATTGGTGCAAGGGCAATCTGTTCAACGGCAAGCAGCTACTACCTTGCAATGCA
species | Glycine max |
transcript | GLYMA20G31810.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
tatctgtgctgcaacaactttgtgtgtaatagttccatgttatggggggtttcagGCAAGAAGATCCTTGCGTGGCTTGAGAGGTTTGTCGAGGTTGAAAACATTGGTGCAAGGGCAATCTGTTCAACGGCAAGCAGCTACTACCTTGCAATGCA
taatagtt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ttatccaactaagttcttagtttcttttattattgggagaatttgtatctgtgctgcaacaactttgtgtgtaatagttccatgttatggggggtttcagGCAAGAAGATCCTTGCGTGGCTTGAGAGGTTTGTCGAGGTTGAAAACATTGGTGCAAGGGCAATCTGTTCAACGGCAAGCAGCTACTACCTTGCAATGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGCT
- - ccaacta
- - - - - - - - - - - - - - - - ttgggag
- - - - - - - - - - - - - - - - - - - - - - - -tctgtgc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - caacaac
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgtgtgt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ccatgtt