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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CCATGGCTTGCGAACTGGGATATTTGAAGCAAGTAAATTGGTGTTGATAAATATTGCTCCTACACTGCCAGAACTCCAGgtaatttgtaaagcctatttgctgttatttatagtctggagtctggactactcctgagtcctgattatgttttccttgtttgttgctgggaatgcatatt...

Basic information

species Glycine max
transcript GLYMA20G31800.2
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA20G31800.1 (Glycine max), 5'ss of exon 6
lower sequence: Vv13s0019g03870.t01 (Vitis vinifera), 5'ss of exon 5
CCATGGCTTGCGAACTGGGATATTTGAAGCAAGTAAATTGGTGTTGATAAATATTGCTCCTACACTGCCAGAACTCCAGgtaat--ttgtaaagcctatttgctgttatttatagtctggagtctggactactcctgagtcctgattatgttttccttgtttgttgctgggaatgcatatt
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CCATGGCTTGCGAACTGGAATTTTTGAAGCAAGCAAGCTTGTGTTGATAAATGTTGCTCCTACCCTTCCAGAGATCCAGgtaatggttattactttaattatttgttattattatctttccttttactcttttgatttgtg-tggtttcatcttctagcttccttggttatattaccagg-
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|15285853|gb|BI469744.1|BI469744
EST:     CAAGTAAATTGGTGTTGATAAATATTGCTCCTACACTGCCAGAACTCCAG                         GTACAATCTGTGGCATCATTCTGTAGCACATTTTTGGGAACAGCTGTACGG
genomic: CAAGTAAATTGGTGTTGATAAATATTGCTCCTACACTGCCAGAACTCCAGgtaatttgta ... gtaaatgtagGTACAATCTGTGGCATCATTCTGTAGCACATTTTTGGGAACAGCTGTACGG
EST: gi|13478155|gb|BG507751.1|BG507751
EST:     CAAGTAAATTGGTGTTGATAAATATTGCTCCTACACTGCCAGAACTCCAG                         GTACAATCTGTGGCATGATTCT
genomic: CAAGTAAATTGGTGTTGATAAATATTGCTCCTACACTGCCAGAACTCCAGgtaatttgta ... gtaaatgtagGTACAATCTGTGGCATCATTCT