1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
ATATCTTATCCTGCAATAGAGAGCCATGAGTGGCGAATTGTTACTGGTTGTGATCCCAAAAATACCAGATGGAGTTACCATAATGGAGGATCTTGGCCAGgttcttcctttctgctcatatattcaaactttaaaatgcatttaatgtgggatttggttaattgggattttgaccggtaggtgtgcttagttgtgcaaac...
species | Glycine max |
transcript | GLYMA20G31730.2 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
EST: TGATCCCAAAAATACCAGATGGAGTTACCATAATGGAGGATCTTGGCCAG TGCTCCTGTGGCTAGTAACAGCTGCTTGTATCAAAACGGGGAGACCACAGAEST: gi|193607777|gb|FK557516.1|FK557516
genomic: TGATCCCAAAAATACCAGATGGAGTTACCATAATGGAGGATCTTGGCCAGgttcttcctt ... ttgagtgcagTGCTCCTGTGGCTAGTAACAGCTGCTTGTATCAAAACGGGGAGACCACAGA
EST: GGAGTTACCATAATGGAGGATCTTGGCCAG TGCTCCTGTGGCTAGTAACAGCTGCTTGTATCAAAACGGGGAGACCACAGAEST: gi|14011212|gb|BG726134.1|BG726134
genomic: GGAGTTACCATAATGGAGGATCTTGGCCAGgttcttcctt ... ttgagtgcagTGCTCCTGTGGCTAGTAACAGCTGCTTGTATCAAAACGGGGAGACCACAGA
EST: TGATCCCAAAAATACCAGATGGAGTTACCATAATGGAGGATCTTGGCCAG TGCTCCTGTGGCTAGTAACAGCTGCTTGTATCAAAACGGGGAGACCACAGAEST: gi|8284373|gb|BE021932.1|BE021932
genomic: TGATCCCAAAAATACCAGATGGAGTTACCATAATGGAGGATCTTGGCCAGgttcttcctt ... ttgagtgcagTGCTCCTGTGGCTAGTAACAGCTGCTTGTATCAAAACGGGGAGACCACAGA
EST: TGATCCCAAAAATACCAGATGGAGTTACCATAATGGAGGATCTTGGCCAG TGCTCCTGTGGCTAGTAACAGCTGCTTGTATCAAAACGGGGAGACCACAGAEST: gi|58018148|gb|CX704890.1|CX704890
genomic: TGATCCCAAAAATACCAGATGGAGTTACCATAATGGAGGATCTTGGCCAGgttcttcctt ... ttgagtgcagTGCTCCTGTGGCTAGTAACAGCTGCTTGTATCAAAACGGGGAGACCACAGA
EST: TGATCCCAAAAATACCAGATGGAGTTACCATAATGGAGGATCTTGGCCAG TGCTCCTGTGGCTAGTAACAGCTGCTTGTATCAAAACGGGGAGACCACAGAEST: gi|254327979|gb|GR834944.1|GR834944
genomic: TGATCCCAAAAATACCAGATGGAGTTACCATAATGGAGGATCTTGGCCAGgttcttcctt ... ttgagtgcagTGCTCCTGTGGCTAGTAACAGCTGCTTGTATCAAAACGGGGAGACCACAGA
EST: TGATCCCAAAAATACCAGATGGAGTTACCATAATGGAGGATCTTGGCCAG TGCTCCTGTGGCTAGTAACAGCTGCTTGTATCAAAACGGGGAGACCACAGAEST: gi|10709954|gb|BF009678.1|BF009678
genomic: TGATCCCAAAAATACCAGATGGAGTTACCATAATGGAGGATCTTGGCCAGgttcttcctt ... ttgagtgcagTGCTCCTGTGGCTAGTAACAGCTGCTTGTATCAAAACGGGGAGACCACAGA
EST: TGATCCCAAAAATACCAGATGGAGTTACCATAATGGAGGATCTTGGCCAG TGCTCCTGTGGCTAGTAACAGCTGCTTGTATCAAAACGGGGAGACCACAGAEST: gi|19936331|gb|BQ080819.1|BQ080819
genomic: TGATCCCAAAAATACCAGATGGAGTTACCATAATGGAGGATCTTGGCCAGgttcttcctt ... ttgagtgcagTGCTCCTGTGGCTAGTAACAGCTGCTTGTATCAAAACGGGGAGACCACAGA
EST: TGATCCCAAAAATACCAGATGGAGTTACCATAATGGAGGATCTTGGCCAG TGCTCCTGTGGCTAGTAACAGCTGCTTGTATCAAAACGGGGAGACCACAGAEST: gi|193541022|gb|FK495680.1|FK495680
genomic: TGATCCCAAAAATACCAGATGGAGTTACCATAATGGAGGATCTTGGCCAGgttcttcctt ... ttgagtgcagTGCTCCTGTGGCTAGTAACAGCTGCTTGTATCAAAACGGGGAGACCACAGA
EST: TGATCCCAAAAATACCAGATGGAGTTACCATAATGGAGGATCTTGGCCAG TGCTCCTGTGGCTAGTAACAGCTGCTTGTATCAAAACGGGGAGACCACAGAEST: gi|15203943|gb|BI426720.1|BI426720
genomic: TGATCCCAAAAATACCAGATGGAGTTACCATAATGGAGGATCTTGGCCAGgttcttcctt ... ttgagtgcagTGCTCCTGTGGCTAGTAACAGCTGCTTGTATCAAAACGGGGAGACCACAGA
EST: CCATAATGGAGGATCTTGGCCAG TGCTCCTGTGGCTAGTAACAGCTGCTTGTATCAAAACGGGGAGACCACAGAEST: gi|37994477|gb|CF806223.1|CF806223
genomic: CCATAATGGAGGATCTTGGCCAGgttcttcctt ... ttgagtgcagTGCTCCTGTGGCTAGTAACAGCTGCTTGTATCAAAACGGGGAGACCACAGA
EST: TTACCATATTGGAGGATCTTGTCCAC TGCTCCTGTGGCTAGTAACAGCTGCTTGTATCAAAACGGGGAGACCACAGAEST: gi|37996959|gb|CF808548.1|CF808548
genomic: TTACCATAATGGAGGATCTTGGCCAGgttcttcctt ... ttgagtgcagTGCTCCTGTGGCTAGTAACAGCTGCTTGTATCAAAACGGGGAGACCACAGA
EST: TGATCCCAAAAATACCAGATGGAGTTACCATAATGGAGGATCTTGGCCAG TGCTCCTGTGGCTAGTAACAGCTGCTTGTATCAAAACGGGGAGACCACAGA
genomic: TGATCCCAAAAATACCAGATGGAGTTACCATAATGGAGGATCTTGGCCAGgttcttcctt ... ttgagtgcagTGCTCCTGTGGCTAGTAACAGCTGCTTGTATCAAAACGGGGAGACCACAGA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ATATCTTATCCTGCAATAGAGAGCCATGAGTGGCGAATTGTTACTGGTTGTGATCCCAAAAATACCAGATGGAGTTACCATAATGGAGGATCTTGGCCAGgttcttcctttctgctcatatattcaaactttaaaatgcatttaatgtgggatttggttaattgggattttgaccggtaggtgtgcttagttgtgcaaac
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAT