Sequence
atgc intronic sequence ATGC exonic sequence...tttccactctagctgttcttctgtacctatgtcatgctatattctaagcatgaagaatgaaagttttgcttgctgatttggttacttctatttgactcagGCAATCTGGATGAGAGGGTGACAGACAGGGTCTTGTATGATATATTAATTCAAGCAGGACGAGTGGTAGACTTGCACATTCCTAAAGATAAGGAATCAGA
Basic information
species | Glycine max |
transcript | GLYMA20G31720.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA20G31720.2 (Glycine max), 3'ss of exon 1
lower sequence: Vv18s0089g00220.t01 (Vitis vinifera), 3'ss of exon 1
tttccactctagctgttcttctgtacctatgtcatgctatattctaagcatgaagaatgaaagttttgcttgctgatttggtt---acttctatttgactcagGCAATCTGGATGAGAGGGTGACAGACAGGGTCTTGTATGATATATTAATTCAAGCAGGACGAGTGGTAGACTTGCACATTCCTAAAGATAAGGAATCAGA
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tttatgttcaagctattttaata-gtccatattaatatgctgtttcatcataacaaaaggatatcttgttt--taatttggttttaatttctattttacatagGTAATTTGGATGAGAGGGTAAGCGACAGGGTTTTGTATGATATTCTGATTCAGGCAGGGCGGGTGGTGGACTTGTACATTCCTCGTGACAAAGAAACTGAMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|19934718|gb|BQ079748.1|BQ079748EST: AGATCCAGAAACAGCTATGTCTGGCAATTCGAATTGCAGTGTTTACATAG GCAATCTGGATGAGAGGGTGACAGACAGGGTCTTGTATGATATATTAATTC
genomic: AGATCCAGAAACAGCTATGTCTGGCAATTCGAATTGCAGTGTTTACATAGgtaagctatt ... tttgactcagGCAATCTGGATGAGAGGGTGACAGACAGGGTCTTGTATGATATATTAATTC
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.aagcatgaagaatgaaagttttgcttgctgatttggttacttctatttgactcagGCAATCTGGATGAGAGGGTGACAGACAGGGTCTTGTATGATATATTAATTCAAGCAGGACGAGTGGTAGACTTGCACATTCCTAAAGATAAGGAATCAGA
cttctattt CT-rich tract
aaagtttt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
tttccactctagctgttcttctgtacctatgtcatgctatattctaagcatgaagaatgaaagttttgcttgctgatttggttacttctatttgactcagGCAATCTGGATGAGAGGGTGACAGACAGGGTCTTGTATGATATATTAATTCAAGCAGGACGAGTGGTAGACTTGCACATTCCTAAAGATAAGGAATCAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA
- -ccactct
- - - - - -gctgttc
- - - - - - - - - - ctgtacc
- - - - - - - - - - - - - - - -tcatgct
- - - - - - - - - - - - - - - - - - - - - - - -gcatgaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gctgatt