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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTTCTACTTATGTGCAATCTGTTTCCGTTCCGCTTCTCTGTATTAGTGCTTTGGATGATCCAATCTGTACAACGGAAGCCATTCCTTGGGATGAATGCAAgtatgctgctctattgtttcattggttctaattaatttgctttctcctgtattaccttagcaccaattttaatgtacttctcttttgatag

Basic information

species Glycine max
transcript GLYMA20G31710.1
intron # 11
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA20G31710.1 (Glycine max), 5'ss of exon 11
lower sequence: GRMZM2G005444_T01 (Zea mays), 5'ss of exon 11
GTTCTACTTATGTGCAATCTGTTTCCGTTCCGCTTCTCTGTATTAGTGCTTTGGATGATCCAATCTGTACAACGGAAGCCATTCCTTGGGATGAATGCAAgtatgctgctct-attgtttcattggttctaattaatttgctttctcctgtattaccttagcaccaatt--ttaatgtacttctcttttgatag-----------------------------------------------
|| ||| ||| ||   |  ||| || |||||  | || ||||| | |||||||||||||||  | || |||| ||| || ||||||||||||||||||| ||    |  |||  | |      || | || |||  |   |  |    | |||    | | |   ||||  | | |    |  |  ||||||                                                 
GTGCTAGTTACGTCGGAAATGTGTCAGTTCCCTTGCTTTGTATCAATGCTTTGGATGATCCTCTTTGCACAAGGGAGGCTATTCCTTGGGATGAATGCAGgtgaatttttcttgtggaactcatgctcctcatttctgaacagttctgtctatgtattaatctttaattcatcactaggatctttatttgatttatggcccataagaatgtattaatcagaagcgtcttgatttgatttag