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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTTTGCTAGGGACTGGAACTTTCTTTGTGATTCGTCAAGTTCTTGTCCGCAGAGAACTTGACCTATCTGCCAAAGAGTTGCAGgtaagagcctatgcatcttccttttggtcctttagatcttgagcaagatatatatggtactagcctcaaaatatattagaccctgaattttatgttagat...

Basic information

species Glycine max
transcript GLYMA20G31640.1
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA20G31640.1 (Glycine max), 5'ss of exon 2
lower sequence: LOC_Os10g32300.1 (Oryza sativa), 5'ss of exon 4
-----------------GTTTGCTAGGGACTGGAACTTTCTTTGTGATTCGTCAAGTTCTTGTCCGCAGAGAACTTGACCTATCTGCCAAAGAGTTGCAGgtaagagc-ctatgcatcttccttttggtcctttagatcttgagcaagatatatatggtactagcctcaaaata-tattagaccctgaattttatgttagat
                 || | || ||  |||| || || ||||| |||||||||||||||||||| ||||| ||||| || ||||||||||||||||||||||  |  ||    |   | |||       |           |  |  | |||||   |      ||| ||||  | |   | |||||| |     |||  
TCTTCTCATACTACTTGGTCTTCTTGGAGCTGGTACATTTTTTGTCATTCGTCAAGTTCTTGTCCGTAGAGAGCTTGATCTTTCTGCCAAAGAGTTGCAGgtaaatgtgctgccaacactacttccaactgtagtaccaccaggtcaattttatattaaaaacctatcagaataacagtgagctctgaatgt-gcaatagt-

upper sequence: GLYMA20G31640.1 (Glycine max), 5'ss of exon 2
lower sequence: LOC_Os08g25890.1 (Oryza sativa), 5'ss of exon 1
-----------------GTTTGCTAGGGACTGGAACTTTCTTTGTGATTCGTCAAGTTCTTGTCCGCAGAGAACTTGACCTATCTGCCAAAGAGTTGCAGgtaagagcctatgcatcttccttttggtcctttagatcttgagcaagatatatatggtactagcctcaaaata--tattagaccctgaatttt-atgttagat
                 || |||| ||  |||| || || || || || ||||| ||||||||||||||||| ||||| || ||||||||||| ||||||||||         || |    ||| |  |  |     |    |  |  |  ||||   |      ||| |||     | |     ||| |||  | |||    
TCTTCTCATACTACTTGGTCTGCTTGGAGCTGGTACATTTTTCGTCATCCGTCAGGTTCTTGTCCGCAGAGAGCTTGATCTTTCTGCCAAAGATTTGCAGgtaaatatgctgccaacactatttcgaactgtactgccacaggtcaatttcatattcaaaacctttcagaatcaccgtaaagttttgagtttagaagttc---

upper sequence: GLYMA20G31640.1 (Glycine max), 5'ss of exon 2
lower sequence: GRMZM5G809292_T02 (Zea mays), 5'ss of exon 3
-----------------GTTTGCTAGGGACTGGAACTTTCTTTGTGATTCGTCAAGTTCTTGTCCGCAGAGAACTTGACCTATCTGCCAAAGAGTTGCAGgtaagagcctatgcatcttccttttggtcctttagatcttgagcaagatatatatggtactagcctcaa--aatatattagaccctgaattttatgttagat----
                 |  |||| ||  |||| || || ||||| || ||||| |||||||| || || || ||||| || ||||||||||||||||| |||||   ||     | ||| || ||||    |||||    ||  |   || |    | | |  | | |   | ||    ||  ||||| | ||    | ||    
TCTGCTCATACTTATTGGACTGCTTGGAGCTGGTACATTTTTTGTTATCCGTCAGGTTCTTGTTCGTAGGGAGCTTGATCTTTCTGCCAAAGAGTTGCAAgtaagccactcgaacttttctttatggt----tagattacaagagatcaatcttatattccaaacactactgaaatgactgattctgaagtgtaaa--aaattgtt

upper sequence: GLYMA20G31640.1 (Glycine max), 5'ss of exon 2
lower sequence: AT1G22700.3 (Arabidopsis thaliana), 5'ss of exon 3
-----------------GTTTGCTAGGGACTGGAACTTTCTTTGTGATTCGTCAAGTTCTTGTCCGCAGAGAACTTGACCTATCTGCCAAAGAGTTGCAGgtaagagcctatgcatcttccttttggtcctttagatcttgagcaagatat-atatggtactagcctcaaa-atatattagaccctgaattttatgttagat
                 | ||||| ||   ||| ||||||| |||||| |||||||| ||||| ||||||||||| ||||| || || ||||| |||||||||  || | |||     || || ||||     | |    ||  |  |  | | |||| || || ||  |  | | ||   |   |||  | | |  ||   
CTTGCTGTTACTACTGGGGTTGCTTGGAGTTGGTACTTTCTATGTGATCCGTCAAGTACTTGTACGCAGAGAACTAGACCTCTCCGCTAAAGAATTGCAGgtaccagacaatgtgc--tctttgtggtagaaaacagtaggataagtaactgagatggaacgagtctagagtagagatgtaatattgatgtctctcgtatca

upper sequence: GLYMA20G31640.1 (Glycine max), 5'ss of exon 2
lower sequence: Vv18s0072g00860.t01 (Vitis vinifera), 5'ss of exon 4
-----------------GTTTGCTAGGGACTGGAACTTTCTTTGTGATTCGTCAAGTTCTTGTCCGCAGAGAACTTGACCTATCTGCCAAAGAGTTGCAGgtaagagcctatgcatcttccttttggtcctttagatcttgagcaagatatatatggtactagcctcaaaatatattagaccctgaat-tttatgttagat--
                 ||||| | ||   |||||| || ||||||||||||||||| ||||| || |||||||||||||| ||||| ||||| ||||| ||||||  |||  | |  |   |||  |  |||     || | |    |  |     |  | |  |    ||  ||    |  | |   |||||  | |||  
CCTTCTTTTACTGTTAGGTTTGATTGGAGTTGGAACCTTTTTTGTGATTCGTCAAGTCCTTGTTCGTAGAGAACTTGACCTTTCTGCTAAAGAATTGCAAgtaagattctagtccttctttatttattatttt---catttatccttttccaacctttttttgaatattgatgaatctttcttttagcatttatagttgatag