Sequence
atgc intronic sequence ATGC exonic sequence...tgaatcatgaataaaatgggtgaattggtttaacctttcataatagatgaatgaacctcattcttaatatgtagtgaacaacaagcgtacctttgtgcagCAGTTGAACTAAAACTCTCCCCAACACAAAAACCTGCTCCAAGTCCACCCCACAAACCTAACCCAAAGTCACACATCATTCTCATCTCTCTAATATCCGA
Basic information
species | Glycine max |
transcript | GLYMA20G31620.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|13312321|gb|BG405972.1|BG405972EST: GTTCTGCTTATGTCTGCTGCAGTGTTATGTTGAACGCATTTAAG CAGTTGAACTAAAACTCTCCCCAACACAAAAACCTGCTCCAAGTC
genomic: GTTCTGCTTATGTCTGCTGCAGTGTTATGTTGAACGCATTTAAGgtattatttg ... ctttgtgcagCAGTTGAACTAAAACTCTCCCCAACACAAAAACCTGCTCCAAGTC
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.gatgaatgaacctcattcttaatatgtagtgaacaacaagcgtacctttgtgcagCAGTTGAACTAAAACTCTCCCCAACACAAAAACCTGCTCCAAGTCCACCCCACAAACCTAACCCAAAGTCACACATCATTCTCATCTCTCTAATATCCGA
tcttaat putative branch site (score: 3)
taccttt putative PPT
attcttaatatgta TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
tgaatcatgaataaaatgggtgaattggtttaacctttcataatagatgaatgaacctcattcttaatatgtagtgaacaacaagcgtacctttgtgcagCAGTTGAACTAAAACTCTCCCCAACACAAAAACCTGCTCCAAGTCCACCCCACAAACCTAACCCAAAGTCACACATCATTCTCATCTCTCTAATATCCGA
- - - - -aataaaa
- - - - - - - - tgggtga
- - - - - - - - - - - - - - - - -cctttca
- - - - - - - - - - - - - - - - - - - - - - - -tgaatga
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgtagtg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aacaaca