1 5' 3' | 2 5' 3' | 3 5' 3' |
...catgtatttagtccatatgacccaaaatgtaggtcctaatttaaatttttccttaaaagaagaaaagaaagaatcttactttgctccaatttcttttcagGTTGAACTTCAAGGAAGCAGTGGTTGATTCAGACATTGACTTGTTCAAGAAAATTCATGGAGTAACAAAGTACCAGTACATGGAAAACGATCCAAAAATG
species | Glycine max |
transcript | GLYMA20G31610.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
tttttccttaaaagaagaaaagaaagaatcttactttgctccaatttcttttcagGTTGAACTTCAAGGAAGCAGTGGTTGATTCAGACATTGACTTGTTCAAGAAAATTCATGGAGTAACAAAGTACCAGTACATGGAAAACGATCCAAAAATG
atcttac putative branch site (score: 3)
ctccaatttcttttc putative PPT
ttaaaagaagaaaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| catgtatttagtccatatgacccaaaatgtaggtcctaatttaaatttttccttaaaagaagaaaagaaagaatcttactttgctccaatttcttttcagGTTGAACTTCAAGGAAGCAGTGGTTGATTCAGACATTGACTTGTTCAAGAAAATTCATGGAGTAACAAAGTACCAGTACATGGAAAACGATCCAAAAATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CATGGA
catgtat
- - - - - - ccatatg
- - - - - - - - - - cccaaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aagaaaa