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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...acatttctgtttttttttatttatcccaaaattgtgtataaatttcatacgcaaggctaataatagtcgtccgagtctgaaaattataatgatcatgcagACTGATCTTGCTGCCGCATCATCAAGTATTCCACTGCCAAATATGAGATTTTCTTGTAGATTTTCACCAAGTGTAGCAGCAGAAACATGGACCTCGAATC

Basic information

species Glycine max
transcript GLYMA20G31580.2
intron # 2
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|298198737|gb|HO042100.1|HO042100
EST:     ATTCCCCTTTACTTATTATTGATTCTTCAGCACAGTTTTGCTATTGCAAG                         ACTGATCTTGCTGCCGCATCATCAAGTATTCCACTGCCAAATATGAGATTT
genomic: ATTCCCCTTTACTTATTATTGATTCTTCAGCACAGTTTTGCTATTGCAAGgtaaatgcat ... gatcatgcagACTGATCTTGCTGCCGCATCATCAAGTATTCCACTGCCAAATATGAGATTT
EST: gi|8283179|gb|BE020740.1|BE020740
EST:     ATTCCCCTTTACTTATTATTGATTCTTCAGCACAGTTTTGCTATTGCAAG                         ACTGATCTTGCTGCCGCATCATCAAGTATTCCACTGCCAAATATGAGATTT
genomic: ATTCCCCTTTACTTATTATTGATTCTTCAGCACAGTTTTGCTATTGCAAGgtaaatgcat ... gatcatgcagACTGATCTTGCTGCCGCATCATCAAGTATTCCACTGCCAAATATGAGATTT
EST: gi|213587770|gb|DB955632.1|DB955632
EST:     ATTCCCCTTTACTTATTATTGATTCTTCAGCACAGTTTTGCTATTGCAAG                         ACTGATCTTGCTGCCGCATCATCAAGTATTCCACTGCCAAATATGAGATTT
genomic: ATTCCCCTTTACTTATTATTGATTCTTCAGCACAGTTTTGCTATTGCAAGgtaaatgcat ... gatcatgcagACTGATCTTGCTGCCGCATCATCAAGTATTCCACTGCCAAATATGAGATTT
EST: gi|151402681|gb|EV272494.1|EV272494
EST:     CCTTTACTTATTATTGATTCTTCAGCACAGTTTTGCTATTGCAAG                         ACTGATCTTGCTGCCGCATCATCAAGTATTCCACTGCCAAATATGAGATTT
genomic: CCTTTACTTATTATTGATTCTTCAGCACAGTTTTGCTATTGCAAGgtaaatgcat ... gatcatgcagACTGATCTTGCTGCCGCATCATCAAGTATTCCACTGCCAAATATGAGATTT
EST: gi|9899755|gb|BE608723.1|BE608723
EST:     ATTCCCCTTTACTTATTATTGATTCTTCAGCACAGTTTTGCTATTGCAAG                         ACTGATCTTGCTGCCGCATCATCAAGTATTCCACTGCCAAATATGAGATTT
genomic: ATTCCCCTTTACTTATTATTGATTCTTCAGCACAGTTTTGCTATTGCAAGgtaaatgcat ... gatcatgcagACTGATCTTGCTGCCGCATCATCAAGTATTCCACTGCCAAATATGAGATTT
EST: gi|192302876|gb|FG998558.1|FG998558
EST:     ATTCCCCTTTACTTATTATTGATTCTTCAGCACAGTTTTGCTATTGCAAG                         ACTGATCTTGCTGCCGCATCATCAAGTATTCCACTGCCAAATATGAGATTT
genomic: ATTCCCCTTTACTTATTATTGATTCTTCAGCACAGTTTTGCTATTGCAAGgtaaatgcat ... gatcatgcagACTGATCTTGCTGCCGCATCATCAAGTATTCCACTGCCAAATATGAGATTT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

catacgcaaggctaataatagtcgtccgagtctgaaaattataatgatcatgcagACTGATCTTGCTGCCGCATCATCAAGTATTCCACTGCCAAATATGAGATTTTCTTGTAGATTTTCACCAAGTGTAGCAGCAGAAACATGGACCTCGAATC
         ggctaat  putative branch site (score: 3)
                                  aaaattataatgatca  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
acatttctgtttttttttatttatcccaaaattgtgtataaatttcatacgcaaggctaataatagtcgtccgagtctgaaaattataatgatcatgcagACTGATCTTGCTGCCGCATCATCAAGTATTCCACTGCCAAATATGAGATTTTCTTGTAGATTTTCACCAAGTGTAGCAGCAGAAACATGGACCTCGAATC

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  CATGGA