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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATATATTAGTTATCATGCTGAGGATGACGTGCAGTCAACCTATGCTGGTGCGCTCTTTCACAATGGTCGAAACTACCATGTCTCCAATAAAAAAAACAGAgtaagtaatttatcaagagaatattaaatggcagatgatggaagagggactcatagcaacctaacccaatttatcttttgtag

Basic information

species Glycine max
transcript GLYMA20G31430.1
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA20G31430.1 (Glycine max), 5'ss of exon 2
lower sequence: Vv18s0075g00120.t01 (Vitis vinifera), 5'ss of exon 2
ATATATTAGTTATCATGCTGAGGATGACGTGCAGTCAACCTATGCTGGTGCGCTCTTTCACAATGGTCGAAACTACCATGTCTCCAATAAAAAAAACAGAgtaagtaattt--atcaagagaatattaaatggcagatgatggaagagggactcatagcaacctaacccaatttatcttttgtag-----------------------------------------------------------
|| |||||| ||||||||  | ||||| || ||||| |||||||||||||| |||||||| |||  |||||| || ||||||||   | | |||||||  |||||   | |  ||          ||   |      || |  | |    |  |  |    | ||   |   || ||  || |||                                                           
ATTTATTAGCTATCATGCCAAAGATGATGTACAGTCCACCTATGCTGGTGCACTCTTTCATAATAATCGAAATTATCATGTCTCTTCTTATAAAAACAATgtaagggttctgaattttccccccctttttttttgtttgctttatgtattatactaattttcttacagctccttttccattatagcatattctttttaataaaactgacaaagtaatattgtttgtttggctcttcgtttgaag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|14011843|gb|BG726765.1|BG726765
EST:     TTCACAATGGTCGAAACTACCATGTCTCCAATNNNNNNNNCAGA                         GATATACTTGTTTATTGGTCTTCATCTCGGTGTCTTCCTCGAAGGAATGAA
genomic: TTCACAATGGTCGAAACTACCATGTCTCCAATAAAAAAAACAGAgtaagtaatt ... tcttttgtagGATATACTTGTTTATTGGTCTTCATCTCGGTGTCTTCCTCGAAGGAATGAA