Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttcgcaccctaatttcattattctgacatcaaaacacgaacattgaactcattgtgttgcgttgcgtttgtgtttttgtggtttcagGCGAACAGGATAACTCCGAGTGAGATGAGAAGAAGATGCACCGTCGCGTATGACGCCGTCAATTTGAGCAAAAACCGATACACGGACGTTTTGCCAT

Basic information

species Glycine max
transcript GLYMA20G31390.1
intron # 1
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|10846323|gb|BF069241.1|BF069241
EST:     AGAAGCTCCACGATCCTCACGTGATCACTCAGGAGTTCGCACACTTGCAG                         GCGAACAGGATAACTCCGAGTGAGATGAGAAGAAGATGCACCGTCGCGTAT
genomic: AGAAGCTCCACGATCCTCACGTGATCACTCAGGAGTTCGCACACTTGCAGgttcgcaccc ... gtggtttcagGCGAACAGGATAACTCCGAGTGAGATGAGAAGAAGATGCACCGTCGCGTAT






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aacacgaacattgaactcattgtgttgcgttgcgtttgtgtttttgtggtttcagGCGAACAGGATAACTCCGAGTGAGATGAGAAGAAGATGCACCGTCGCGTATGACGCCGTCAATTTGAGCAAAAACCGATACACGGACGTTTTGCCAT
                                        tttttgt  CT-rich tract
                                      tgttttt  TA-rich tract