Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|10237915|gb|BE806803.1|BE806803EST: CCGTCGACGTCGTCCGCCATCGTCACATCTCGCCGGAGCGTCGCGTCGCT GGCTAAGTGCCAAGTGCTGCTGCTGATTTTGTGGCTTGTTGATAAAAATGA
genomic: CCGTCGACGTCGTCCGCCATCGTCACATCTCGCCGGAGCGTCGCGTCGCTgtaagatacc ... gaacttgtagGGCTAAGTGCCAAGTGCTGCTGCTGATTTTGTGGCTTGTTGATAAAAATGA
EST:
gi|37996050|gb|CF807639.1|CF807639EST: CCGTCGACGTCGTCCGCCATCGTCACATCTCGCCGGAGCGTCGCGTCGCT GGCTAAGTGCCAAGTGCTGCTGCTGATTTTGTGGCTTGTTGATAAAAATGA
genomic: CCGTCGACGTCGTCCGCCATCGTCACATCTCGCCGGAGCGTCGCGTCGCTgtaagatacc ... gaacttgtagGGCTAAGTGCCAAGTGCTGCTGCTGATTTTGTGGCTTGTTGATAAAAATGA
EST:
gi|58018215|gb|CX704957.1|CX704957EST: CCGTCGACGTCGTCCGCCATCGTCACATCTCGCCGGAGCGTCGCGTCGCT GGCTAAGTGCCAAGTGCTGCTGCTGATTTTGTGGCTTGTTGATAAAAATGA
genomic: CCGTCGACGTCGTCCGCCATCGTCACATCTCGCCGGAGCGTCGCGTCGCTgtaagatacc ... gaacttgtagGGCTAAGTGCCAAGTGCTGCTGCTGATTTTGTGGCTTGTTGATAAAAATGA
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.attatgtattgtagggatgcttgattgtgttgtttatttgattttgaacttgtagGGCTAAGTGCCAAGTGCTGCTGCTGATTTTGTGGCTTGTTGATAAAAATGAGACTTATAACACATAACATGCTGTCATCGAACATAAAGGGTGTTGTAAA
atttgat putative branch site (score: 5)
ttgtttatttgatttt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
ccatgaagcagctactaaaacccgacacagacttgatttattgggattatgtattgtagggatgcttgattgtgttgtttatttgattttgaacttgtagGGCTAAGTGCCAAGTGCTGCTGCTGATTTTGTGGCTTGTTGATAAAAATGAGACTTATAACACATAACATGCTGTCATCGAACATAAAGGGTGTTGTAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG