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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTCATTTTTGGGGTTTTCTTCTCTGTATTTCAAACACATGAGAGAATCATTTGAATTTGGCAGCCAAACTTGTCTTGCAAAAGTCTTGGGGATATATCAGgttggtgagctgtttgttccgtatctttttcttttccattggccaactttttctcctgtttaggcttacacatgtctttgttccctgaaaatagttgtta...

Basic information

species Glycine max
transcript GLYMA20G31340.1
intron # 11
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|21994081|gb|BQ785609.1|BQ785609
EST:     GGCAGCCAAACTTGTCTTGCAAAAGTCTTGGGGATATATCAG                         GTTACTAAAAGACACGTCAAAAGTGGAAAAGAGGTTAAATATGACCCCCTC
genomic: GGCAGCCAAACTTGTCTTGCAAAAGTCTTGGGGATATATCAGgttggtgagc ... ctcaatacagGTTACTAAAAGACACGTCAAAAGTGGAAAAGAGGTTAAATATGACCCCCTC
EST: gi|207837027|gb|GD807566.1|GD807566
EST:     TTGAATTTGGCAGCCAAACTTGTCTTGCAAAAGTCTTGGGGATATATCAG                         GTTACTAAAAGACACGTCAAAAGTGGAAAAGAGGTTAAATATGACCCCCTC
genomic: TTGAATTTGGCAGCCAAACTTGTCTTGCAAAAGTCTTGGGGATATATCAGgttggtgagc ... ctcaatacagGTTACTAAAAGACACGTCAAAAGTGGAAAAGAGGTTAAATATGACCCCCTC