Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...attatgaattgtttgttctcttaaatttgatgtgttcatcttcaaaaaaaaaaaatgaaccgagtcatcaataatgttgtcccttaaaattgtatgatagTGGTTCCTGGGCTGCAGTTGGAGGCATGGATAAAAAACTTATCATCTGGGATATAGAGCATTTATTACCCCGAGGCACTTGTGAACATGAG

Basic information

species Glycine max
transcript GLYMA20G31330.3
intron # 9
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|192316804|gb|FK006059.1|FK006059
EST:     GCCCTTGCTTCTCATTCAGATTCCATTGAGTGTGTTGGGTTTGCACCAAG                         TGGTTCCTGGGCTGCAGTTGGAGGCATGGATAAAAAACTTATCATCTGGGA
genomic: GCCCTTGCTTCTCATTCAGATTCCATTGAGTGTGTTGGGTTTGCACCAAGgtatgtgtta ... tgtatgatagTGGTTCCTGGGCTGCAGTTGGAGGCATGGATAAAAAACTTATCATCTGGGA
EST: gi|21888443|gb|BQ741656.1|BQ741656
EST:     TTCAGATTCCATTGAGTGTGTTGGGTTTGCACCAAG                         TGGTTCCTGGGCTGCAGTTGGAGGCATGGATAAAAAACTTATCATCTGGGA
genomic: TTCAGATTCCATTGAGTGTGTTGGGTTTGCACCAAGgtatgtgtta ... tgtatgatagTGGTTCCTGGGCTGCAGTTGGAGGCATGGATAAAAAACTTATCATCTGGGA
EST: gi|192316805|gb|FK006060.1|FK006060
EST:     GCCCTTGCTTCTCATTCAGATTCCATTGAGTGTGTTGGGTTTGCACCAAG                         TGGTTCCTGGGCTGCAGTTGGAGGCATGGATAAAAAACTTATCATCTGGGA
genomic: GCCCTTGCTTCTCATTCAGATTCCATTGAGTGTGTTGGGTTTGCACCAAGgtatgtgtta ... tgtatgatagTGGTTCCTGGGCTGCAGTTGGAGGCATGGATAAAAAACTTATCATCTGGGA
EST: gi|51343389|gb|CO984122.1|CO984122
EST:     GCCCTTGCTTCTCATTCAGATTCCATTGAGTGTGTTGGGTTTGCACCAAG                         TGGTTCCTGGGCTGCAGTTGGAGGCATGGATAAAAAACTTATCATCTGGGA
genomic: GCCCTTGCTTCTCATTCAGATTCCATTGAGTGTGTTGGGTTTGCACCAAGgtatgtgtta ... tgtatgatagTGGTTCCTGGGCTGCAGTTGGAGGCATGGATAAAAAACTTATCATCTGGGA
EST: gi|23051895|gb|BU577114.1|BU577114
EST:     GCCCTTGCTTCTCATTCAGATTCCATTGAGTGTGTTGGGTTTGCACCAAG                         TGGTTCCTGGGCTGCAGTTGGAGGCATGGATAAAAAACTTATCATCTGGGA
genomic: GCCCTTGCTTCTCATTCAGATTCCATTGAGTGTGTTGGGTTTGCACCAAGgtatgtgtta ... tgtatgatagTGGTTCCTGGGCTGCAGTTGGAGGCATGGATAAAAAACTTATCATCTGGGA
EST: gi|192310896|gb|FK000343.1|FK000343
EST:     GCCCTTGCTCCTCATTCAGATTCCATTGAGTGTGTTGGGTTTGCACCAAG                         TGGTTCCTGGGCTGCAGTTGGAGGCATGGATAAAAAACTTATCATCTGGGA
genomic: GCCCTTGCTTCTCATTCAGATTCCATTGAGTGTGTTGGGTTTGCACCAAGgtatgtgtta ... tgtatgatagTGGTTCCTGGGCTGCAGTTGGAGGCATGGATAAAAAACTTATCATCTGGGA
EST: gi|192300197|gb|FG989319.1|FG989319
EST:     GCCCTTGCTCCTCATTCAGATTCCATTGAGTGTGTTGGGTTTGCACCAAG                         TGGTTCCTGGGCTGCAGTTGGAGGCATGGATAAAAAACTTATCATCTGGGA
genomic: GCCCTTGCTTCTCATTCAGATTCCATTGAGTGTGTTGGGTTTGCACCAAGgtatgtgtta ... tgtatgatagTGGTTCCTGGGCTGCAGTTGGAGGCATGGATAAAAAACTTATCATCTGGGA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aaaaaaaaaatgaaccgagtcatcaataatgttgtcccttaaaattgtatgatagTGGTTCCTGGGCTGCAGTTGGAGGCATGGATAAAAAACTTATCATCTGGGATATAGAGCATTTATTACCCCGAGGCACTTGTGAACATGAG
                                      ttaaaattgtatgata  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
attatgaattgtttgttctcttaaatttgatgtgttcatcttcaaaaaaaaaaaatgaaccgagtcatcaataatgttgtcccttaaaattgtatgatagTGGTTCCTGGGCTGCAGTTGGAGGCATGGATAAAAAACTTATCATCTGGGATATAGAGCATTTATTACCCCGAGGCACTTGTGAACATGAG

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCA
- - - - -tgtttgt
- - - - - - - - - - - - - - - tgtgttc
- - - - - - - - - - - - - - - - - - - - - -aaaaaaa