1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
TGTCACCGATGGATCATCTCATATCCTTGGAAGAAGCTCATTACCTGTACATGCAGCTCCTAAAGCGGAAGGGCAATACTCTGAGCAACAATCTTCTCAGgtatgtgacttggtgattcatagataagaagttaaggtgaacaattttcttatgaatttattcaatgattcattgttagcatttgaatttggatgcaaaa...
species | Glycine max |
transcript | GLYMA20G31220.1 |
intron # | 9 |
splice site | 5' |
intron type | U2 |
EST: ATGCAGCTCCTAAAGCGGAAGGGCAATACTCTGAGCAACAATCTTCTCAG CTTCCACCTGATGTGGAGTCTGTTTTGCTGCAACAAGTATTGAATCTGACAEST: gi|254344560|gb|GR855431.1|GR855431
genomic: ATGCAGCTCCTAAAGCGGAAGGGCAATACTCTGAGCAACAATCTTCTCAGgtatgtgact ... ctcatcccagCTTCCACCTGATGTGGAGTCTGTTTTGCTGCAACAAGTATTGAATCTGACA
EST: ATGCAGCTCCTAAAGCGGAAGGGCAATACTCTGAGCAACAATCTTCTCAG CTTCCACCTGATGTGGAGTCTGTTTTGCTGCAACAAGTATTGAATCTGACAEST: gi|209726899|gb|BW680254.1|BW680254
genomic: ATGCAGCTCCTAAAGCGGAAGGGCAATACTCTGAGCAACAATCTTCTCAGgtatgtgact ... ctcatcccagCTTCCACCTGATGTGGAGTCTGTTTTGCTGCAACAAGTATTGAATCTGACA
EST: ATGCAGCTCCTAAAGCGGAAGGGCAATACTCTGAGCAACAATCTTCTCAG CTTCCACCTGATGTGGAGTCTGTTTTGCTGCAACAAGTATTGAATCTGACAEST: gi|254344561|gb|GR855432.1|GR855432
genomic: ATGCAGCTCCTAAAGCGGAAGGGCAATACTCTGAGCAACAATCTTCTCAGgtatgtgact ... ctcatcccagCTTCCACCTGATGTGGAGTCTGTTTTGCTGCAACAAGTATTGAATCTGACA
EST: ATGCAGCTCCTAAAGCGGAAGGGCAATACTCTGAGCAACAATCTTCTCAG CTTCCACCTGATGTGGAGTCTGTTTTGCTGCAACAAGTATTGAATCTGACA
genomic: ATGCAGCTCCTAAAGCGGAAGGGCAATACTCTGAGCAACAATCTTCTCAGgtatgtgact ... ctcatcccagCTTCCACCTGATGTGGAGTCTGTTTTGCTGCAACAAGTATTGAATCTGACA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TGTCACCGATGGATCATCTCATATCCTTGGAAGAAGCTCATTACCTGTACATGCAGCTCCTAAAGCGGAAGGGCAATACTCTGAGCAACAATCTTCTCAGgtatgtgacttggtgattcatagataagaagttaaggtgaacaattttcttatgaatttattcaatgattcattgttagcatttgaatttggatgcaaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - GCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTC