1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
TGGAGTCACTGCAGCCCCTAATGATAATCAGCGTCCTGGAGCATTGTCTACCACACTTGCCTCAGCTCTTGCCTCTGCTACCCCAGAAAATCAGCGCATGgtgggtataaattgatactttttatgcatatgcatactgcttatgtttcactttgatcttgagagttttcctctctcacaattcactccttattttaaat...
species | Glycine max |
transcript | GLYMA20G31120.1 |
intron # | 6 |
splice site | 5' |
intron type | U2 |
EST: CCACACTTGCCTCAGCTCTTGCNNCTGCTACCCCAGAAAATCAGCGCATG ATGTTGGGTGAACATCTATATCCCCTTGTGGAACGACTCGCACCAAACCAAEST: gi|193578629|gb|FK534825.1|FK534825
genomic: CCACACTTGCCTCAGCTCTTGCCTCTGCTACCCCAGAAAATCAGCGCATGgtgggtataa ... aaattaacagATGTTGGGTGAACATCTATATCCCCTTGTGGAACGACTCGCACCAAACCAA
EST: CCACACTTGCCTCGGCTCTTGCCTCTGCTACCCCAGAAAATCAGCGCATG ATGTTGGGTGAACATCTATATCCCCTTGTGGAACGACTCGCACCAAACCAAEST: gi|16343973|gb|BI969568.1|BI969568
genomic: CCACACTTGCCTCAGCTCTTGCCTCTGCTACCCCAGAAAATCAGCGCATGgtgggtataa ... aaattaacagATGTTGGGTGAACATCTATATCCCCTTGTGGAACGACTCGCACCAAACCAA
EST: CCACACTTGCCTCAGCTCTTGCCTCTGCTACCCCAGAAAATCAGCGCATG ATGTTGGGTGAACATCTATATCCCCTTGTGGAACGACTCGCACCAAACCAAEST: gi|6095039|gb|AW119706.1|AW119706
genomic: CCACACTTGCCTCAGCTCTTGCCTCTGCTACCCCAGAAAATCAGCGCATGgtgggtataa ... aaattaacagATGTTGGGTGAACATCTATATCCCCTTGTGGAACGACTCGCACCAAACCAA
EST: CCACACTTGCCTCAGCTCTTGCCTCTGCTACCCCAGAAAATCAGCGCATG ATGTTGNGTGAACATCTATATCCCCTTGTGGAACGACTCGCACCANACCAA
genomic: CCACACTTGCCTCAGCTCTTGCCTCTGCTACCCCAGAAAATCAGCGCATGgtgggtataa ... aaattaacagATGTTGGGTGAACATCTATATCCCCTTGTGGAACGACTCGCACCAAACCAA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TGGAGTCACTGCAGCCCCTAATGATAATCAGCGTCCTGGAGCATTGTCTACCACACTTGCCTCAGCTCTTGCCTCTGCTACCCCAGAAAATCAGCGCATGgtgggtataaattgatactttttatgcatatgcatactgcttatgtttcactttgatcttgagagttttcctctctcacaattcactccttattttaaat
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ctctctc