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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CTAAGGAGCTGCAGGAGTACTTCAAACAGAAGAAGCTGGAAGATGCAAATCAGGGTCCTTTCTTTGGCTTCATTGGCAAAAATGAGATTAGCAACGGAAGgtaaaaaaattaattttcttttgggacctattaaagttggagtttttcttatgcgggtttatgttgcatttttttttttttttaaatgttggtcttggta...

Basic information

species Glycine max
transcript GLYMA20G30940.1
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA20G30940.1 (Glycine max), 5'ss of exon 1
lower sequence: LOC_Os01g40710.1 (Oryza sativa), 5'ss of exon 1
CTAAGGAGCTGCAGGAGTACTTCAAACAGAAGAAGCTGGAAGATGCAAATCAGGGTCCTTTCTTTGGCTTCATTGGCAAAAATGAGATTAGCAACGGAAGgtaaaaaaat--taattttcttttgggacctattaaagttggagtttttcttatgcgggtttatgttgcattttt-ttttttttttaaatgttggtcttggta
| ||||| |||||||| |||||||| |||||||||||||| || ||  | |||||||| |||||||| ||| | ||||| |||||||||  ||| ||||||||         |  |   |   ||  |    | |       | || |   |        || | |||  | | |   |  || ||| |  || | |  | | 
CCAAGGATCTGCAGGATTACTTCAAGCAGAAGAAGCTGGACGAGGCTGACCAGGGTCCCTTCTTTGGGTTCTTGGGCAAGAATGAGATTTCCAATGGAAGgtacgtttgccctgctccccccctgaaaagattcaggaacaaatttgtcaatgaaaaaaattctcttgattatctgcatgattgttagaaattaggc--gat-

upper sequence: GLYMA20G30940.1 (Glycine max), 5'ss of exon 1
lower sequence: GRMZM2G019807_T01 (Zea mays), 5'ss of exon 1
CTAAGGAGCTGCAGGAGTACTTCAAACAGAAGAAGCTGGAAGATGCAAATCAGGGTCCTTTCTTTGGCTTCATTGGCAAAAATGAGATTAGCAACGGAAGgtaaaaaaattaattttcttttgggacctattaaagttg-------gagtttttcttatgcgggtttatgttgcatttttttttttttttaaatgttggtcttggta
| ||||| |||||||||||||||||  ||||||||||||| || ||  | |||||||| ||||| || ||| |   ||| |||||||||  ||||||||||||      ||      | |    ||   || ||| |||       ||     | ||          || | |   ||    |||||  ||   ||   |      |
CCAAGGACCTGCAGGAGTACTTCAAGAAGAAGAAGCTGGAGGAGGCCGACCAGGGTCCGTTCTTCGGGTTCTTGCCCAAGAATGAGATTTCCAACGGAAGgtacg----tttgcccccctgcaagatgcatcaaatttgtgaaccagaaagccttttgaataatccaatatggttcttcagatttttccta---gtgccttcaaaca

upper sequence: GLYMA20G30940.1 (Glycine max), 5'ss of exon 1
lower sequence: Vv18s0072g00120.t01 (Vitis vinifera), 5'ss of exon 1
CTAAGGAGCTGCAGGAGTACTTCAAACAGAAGAAGCTGGAAGATGCAAATCAGGGTCCTTTCTTTGGCTTCATTGGCAAAAATGAGATTAGCAACGGAAGgtaaaaaaattaattttcttttgggacctattaaagttggagtttttctta-tgcgggtttatgttgcatttttttttttttttaaatgt-tggtcttggta
|||||||||| ||||| || ||||| |||| |||||| || || || |||||||||||||||||||||||||||||||| |||||||||  ||| |||||||| |  |  |  |||  || |      | | | | || || |||||     |  ||||||        |      |||   | |    | ||    |  | 
CTAAGGAGCTTCAGGATTATTTCAAGCAGAGGAAGCTTGAGGAGGCCAATCAGGGTCCTTTCTTTGGCTTCATTGGCAAGAATGAGATTTCCAATGGAAGgtacatgatgtt-tttctttctctattttgtcagattttgaattttttcagctttgggtttcaagaatttggccaatttgactgacccatatgagtataat-

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|22525373|gb|BU084184.1|BU084184
EST:     CAGGGTCCTTTCTTTGGCTTCATTGGCAAAAATGAGATTAGCAACGGAAG                         ATGGGCTATGTTTGGTTTTGCTGTTGGATTGCTAACAGAGTATGCAACAGG
genomic: CAGGGTCCTTTCTTTGGCTTCATTGGCAAAAATGAGATTAGCAACGGAAGgtaaaaaaat ... gtttcaacagATGGGCTATGTTTGGTTTTGCTGTTGGATTGCTAACAGAGTATGCAACAGG
EST: gi|19348188|gb|BM892720.1|BM892720
EST:     CAGGGTCCTTTCTTTGGCTTCATTGGCAAAAATGAGATTAGCAACGGAAG                         ATGGGCTATGTTTGGTTTTGCTGTTGGATTGCTAACAGAGTATGCAACAGG
genomic: CAGGGTCCTTTCTTTGGCTTCATTGGCAAAAATGAGATTAGCAACGGAAGgtaaaaaaat ... gtttcaacagATGGGCTATGTTTGGTTTTGCTGTTGGATTGCTAACAGAGTATGCAACAGG