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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTTGTATCGTCCTCCTCGTTGCTCGCATTGCTCCATTTGCAACAACTGTGTTGAGCGTTTTGATCACCATTGCCCTTGGGTGGGCCAATGCATTGGTCTGgtatgatagttgacagtcatgacatacttgattttatgatacacgttttcttctttattggtgtatgctatttacttgttttctttgttctcacgtatttttgtgccttttccaatgtgcag

Basic information

species Glycine max
transcript GLYMA20G30860.1
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA20G30860.1 (Glycine max), 5'ss of exon 2
lower sequence: LOC_Os05g36090.1 (Oryza sativa), 5'ss of exon 3
GTTGTATCGTCCTCCTCGTTGCTCGCATTGCTCCATTTGCAACAACTGTGTTGAGCGTTTTGATCACCATTGCCCTTGGGTGGGCCAATGCATTGGTCTGgtatgatagttgacagtcatgacatacttgattttatgatacacgttttcttctttattggtgtatgctatttacttgttttctttgttctcacgtatttttgtgccttttccaatgtgcag
| | || || || ||||| || ||||| || || || |||||||| ||||| ||||| |||||||| |||||||||||||| || ||||||||||| | ||||  ||  ||  | ||| ||  | |  | |||| |   | || |     |  |    |          ||| |||||||   ||| |  | ||   ||   |                   
GATTTACCGGCCCCCTCGGTGTTCGCACTGTTCAATATGCAACAATTGTGTCGAGCGCTTTGATCATCATTGCCCTTGGGTTGGACAATGCATTGGACAGgtacaat--ttctctgtc-tgctaaagct-atttcagctttcatgaaaattgatgagctcaacagaatcattaacttgttacatttatcttgacaccttagagg------------------

upper sequence: GLYMA20G30860.1 (Glycine max), 5'ss of exon 2
lower sequence: LOC_Os01g64810.2 (Oryza sativa), 5'ss of exon 3
GTTGTATCGTCCTCCTCGTTGCTCGCATTGCTCCATTTGCAACAACTGTGTTGAGCGTTTTGATCACCATTGCCCTTGGGTGGGCCAATGCATTGGTCTGgta--tgatagttgacagtcatgacatacttg-attttatgat-acacgttttcttctttattggtgtatgctatttacttgttttctttgt-tctcacgtatttttgtgccttttccaatgtgcag
| | | ||| |||||||| || ||||| || |||||||||||||| || || || || ||||| || |||||||| ||||| || |||||||||||   ||||  |  |  |||   || || |  || |   |||   |  | | | | || ||  |  | |   | |   |    |  || ||  ||    ||| | |                           
GGTTTTTCGGCCTCCTCGGTGTTCGCACTGTTCCATTTGCAACAATTGCGTGGAACGGTTTGACCATCATTGCCCCTGGGTAGGGCAATGCATTGGAAAGgtaacttttttttgtgtgttataagctagtaatattaagtagtgagatgattactcttacactacagcaaattcagcaactgcttgattaaaatctaaag---------------------------

upper sequence: GLYMA20G30860.1 (Glycine max), 5'ss of exon 2
lower sequence: GRMZM2G100641_T01 (Zea mays), 5'ss of exon 3
GTTGTATCGTCCTCCTCGTTGCTCGCATTGCTCCATTTGCAACAACTGTGTTGAGCGTTTTGATCACCATTGCCCTTGGGTGGGCCAATGCATTGGTCTGgtatgatagttgacagtcatgacatacttgattttatgatacacgttttcttctttattggtgtatgctatttacttgttttctttgttctcacgtatttttgtgccttttccaatgtgcag
| | ||||| |||||||| ||||| || || || || |||||||| ||||| ||||| ||||| || |||||||| ||||| || ||||||||||| | |||| ||||||      ||      ||||  | | ||      |  |||| |  ||| ||| ||||| | | |  |     |   | |  |      || ||  |  |               
GATTTATCGGCCTCCTCGATGCTCACACTGTTCGATATGCAACAATTGTGTAGAGCGCTTTGACCATCATTGCCCCTGGGTTGGACAATGCATTGGGCAGgta-gatagtcctatttctc----tactgtaatcta--gcgtattttttatgatttgttgctgtat-caactagcaaacataaatagaccctgaacatgttgatttca--------------

upper sequence: GLYMA20G30860.1 (Glycine max), 5'ss of exon 2
lower sequence: GRMZM2G163717_T04 (Zea mays), 5'ss of exon 3
GTTGTATCGTCCTCCTCGTTGCTCGCATTGCTCCATTTGCAACAACTGTGTTGAGCGTTTTGATCACCATTGCCCTTGGGTGGGCCAATGCATTGGTCTGgtatgatagttgacagtcatgacatacttgattttatgatacacgttttc--ttctttattggtgta--tgctatttacttgttttctttgtt------ctcacgtatttttgtgccttttccaatgtgcag
| | || || |||||||| |||||||| |||||||  ||  | |||||||| ||||| |||||||| || ||||||||||| || ||||| |||||   ||| || || |    | |  |    || ||  |   | || ||| ||| ||  ||| |||       |  | | |  |    | | |   | |         || |  | | ||   || ||    | |||||
GATATACCGGCCTCCTCGGTGCTCGCACTGCTCCAAATGTGATAACTGTGTCGAGCGCTTTGATCATCACTGCCCTTGGGTTGGGCAATGTATTGGAGAGgt-tggtaatgttgatttctt---tattttctcagaggaaacaagttatcgattcattaaaaaaacaaatacaacctgacagctgttcctataaatcagtccaggcttatctgcatctgttttcctttgcag

upper sequence: GLYMA20G30860.1 (Glycine max), 5'ss of exon 2
lower sequence: GRMZM5G863679_T01 (Zea mays), 5'ss of exon 1
GTTGTATCGTCCTCCTCGTTGCTCGCATTGCTCCATTTGCAACAACTGTGTTGAGCGTTTTGATCACCATTGCCCTTGGGTGGGCCAATGCATTGGTCTGgt-atgatagttgacagtcatgacatacttgattttatgatacacgttttcttctttattggtgtatgctatttacttgttttctttgttctcacgtatttttgtgccttttccaatgtgcag
| | || || ||||||   ||||| || |||||||  ||  | ||||||||||||||||||||||| || ||||||||| | || ||||| |||||   ||| |  |  |||||      |    |    ||    |  |   | |  || |  ||| ||     || | |  |  | | | |   | |    | |                           
GGTATACCGACCTCCTTTGTGCTCACACTGCTCCAAATGTGATAACTGTGTTGAGCGTTTTGATCATCACTGCCCTTGGATTGGGCAATGTATTGGAGAGgttagtaatgttgatttctttattttctcagaggaaacaagttatggattatattttttttaaaaatacaacctggtagctgttactatatgaaagggaa-----------------------

upper sequence: GLYMA20G30860.1 (Glycine max), 5'ss of exon 2
lower sequence: Vv18s0072g00240.t01 (Vitis vinifera), 5'ss of exon 3
GTTGTATCGTCCTCCTCGTTGCTCGCATTGCTCCATTTGCAACAACTGTGTTGAGCGTTTTGATCACCATTGCCCTTGGGTGGGCCAATGCATTGGTCTGgtatgat----agttgacagtc-atgaca--------tacttgattttatgatacacgttttcttctttattggtgtatgctatttacttgtt------ttctttgttctcacgtatttttgtgccttttccaatgtgcag
| | ||||| |||||||| |||||||||||||||||||||||||| ||||| || |||||||||||||| ||||||||||| ||||| ||| |||| |||||||| |    |||| ||| |  |||  |        || ||| | || |   |  | || | |       || | | || |   | ||  ||      |  | | | |  |   || |   | | | ||   ||||||||
GATATATCGCCCTCCTCGATGCTCGCATTGCTCCATTTGCAACAATTGTGTAGAACGTTTTGATCACCACTGCCCTTGGGTAGGCCAGTGCGTTGGACTGgtatgctgttcagtttacaatttatggtagttgtttctatttgttcttgttccattccttctgtctggagctgttttgtgttcccttctatttgggaaatgttatatacaaattcatctaacttcttgtttttatgtgcag

upper sequence: GLYMA20G30860.1 (Glycine max), 5'ss of exon 2
lower sequence: PP1S36_22V6.1 (Physcomitrella patens), 5'ss of exon 3
GTTGTATCGTCCTCCTCGTTGCTCGCATTGCTCCATTTGCAACAACTGTGTTGAGCGTTTTGATCACCATTGCCCTTGGGTGGGCCAATGCATTGGTCTGgtatgatagttgacagtc--atgacatacttgattttatgatacacgtt---ttcttctttattggtgtatgctatttacttgttttctttgttctcacgtatttttgtgccttttccaatgtgcag-----------------------------------------------------
| | |||||||| ||  | || || || |||||||| |||||||| || |||   || ||||||||||| ||||||||||| || ||||| ||||||| |||| |    ||    ||   || || ||    | ||    | |  || |   || |  |   ||||||| |  |||| |      ||  ||| |   |||  |||   ||    |     |||                                                         
GCTTTATCGTCCACCGAGGTGTTCTCACTGCTCCATATGCAACAATTGCGTTTTACGATTTGATCACCACTGCCCTTGGGTTGGACAATGTATTGGTCAGgtacgcacttttcttgttctatcacctatactacttaggcacattcgatgaattatgatgcgttggtgtgt--tattgatcatactttgttggttatacgagtttggttgatggtattgctgtaagagctctcacacgcctgattgtttctcgtggtcaattgtactgtgatgtttgcag

upper sequence: GLYMA20G30860.1 (Glycine max), 5'ss of exon 2
lower sequence: PP1S26_92V6.1 (Physcomitrella patens), 5'ss of exon 3
GTTGTATCGTCCTCCTCGTTGCTCGCATTGCTCCATTTGCAACAACTGTGTTGAGCGTTTTGATCACCATTGCCCTTGGGTGGGCCAATGCATTGGTCTGgtatgatagttgacagtcatgacatacttgattttatgatacacgttttcttctttattggtgtatgctatttacttgttttctttgttctcacgtatttttgtgccttttccaatgtgcag
| | |||||||| || ||||| || || |||||||| |||||||| || |||   || |||||||| |||||||||||||| || |||||||| || | ||||||  |  |  | |   |  ||      ||  || | ||    | | |    | |||   | ||  | |||| | ||  | |||   |        || || |                 
GCTTTATCGTCCACCCCGTTGTTCCCACTGCTCCATATGCAACAATTGCGTTCTACGATTTGATCATCATTGCCCTTGGGTTGGGCAATGCATCGGCCAGgtatg-cacctctctgcttttgcacgt---atactacgtta-gtatgtgcccggtgatttaagaatcattttta-tcgtactgtttacgcgtggtgggttctgcga----------------

upper sequence: GLYMA20G30860.1 (Glycine max), 5'ss of exon 2
lower sequence: PP1S209_125V6.1 (Physcomitrella patens), 5'ss of exon 3
GTTGTATCGTCCTCCTCGTTGCTCGCATTGCTCCATTTGCAACAACTGTGTTGAGCGTTTTGATCACCATTGCCCTTGGGTGGGCCAATGCATTGGTCTGgtatgatagttgacagtcatgacatacttgattttatgatacacgttttcttctttattggtgtatgctatttacttgttttctttgttctcacgtatttttgtgccttttccaatgtgcag
| | |||||||| || ||||| || || |||||||| ||||| || || |||   || ||||||||||| ||||||||||| || ||||| ||||||| ||||||    ||    ||| |   |         ||     | ||    ||   |    ||   |    |  |   | ||  | |||   |  |  |  || |                    
GCTTTATCGTCCACCCCGTTGTTCTCACTGCTCCATATGCAATAATTGCGTTCTACGATTTGATCACCACTGCCCTTGGGTCGGTCAATGTATTGGTCAGgtatgcatttttcttgtcgtactacctagaccgtttctgcataca---tcaattgagctgaaatgcattgata--tcgtgatgtttacacgtatttgattctaca-----------------

upper sequence: GLYMA20G30860.1 (Glycine max), 5'ss of exon 2
lower sequence: EFJ05613 (Selaginella moellendorffii), 5'ss of exon 3
GTTGTATCGTCCTCCTCGTTGCTCGCATTGCTCCATTTGCAACAACTGTGTTGAGCGTTTTGATCACCATTGCCCTTGGGTGGGCCAATGCATTGGTCTGgtatgatagttgacagtcatgacatacttgattttatgatacacgttttcttctttattggtgtatgctatttacttgttttctttgttctcacgtatttttgtgccttttccaatgtgcag
| | ||  | |||||||| ||||| || |||||  | |||||||| || || ||||||||||||||||| || || ||||| || ||||||||||| |  ||| | |      |        | |  |     |||     ||  ||| |   | | |||  |                                                           
GCTTTACAGGCCTCCTCGCTGCTCTCACTGCTCGGTGTGCAACAATTGCGTGGAGCGTTTTGATCACCACTGTCCATGGGTTGGACAATGCATTGGCCAAgtaagct------ccacttcttcctgttatcacttacagaccagctttccacttctcttgcag-----------------------------------------------------------

upper sequence: GLYMA20G30860.1 (Glycine max), 5'ss of exon 2
lower sequence: EFJ28891 (Selaginella moellendorffii), 5'ss of exon 3
GTTGTATCGTCCTCCTCGTTGCTCGCATTGCTCCATTTGCAACAACTGTGTTGAGCGTTTTGATCACCATTGCCCTTGGGTGGGCCAATGCATTGGTCTGgtatgatagttgacagtcatgacatacttgattttatgatacacgttttcttctttattggtgtatgctatttacttgttttctttgttctcacgtatttttgtgccttttccaatgtgcag
| | ||  | |||||||| ||||| || |||||  | |||||||| || || ||||||||||||||||| || || ||||| || ||||||||||| |  ||| | |      |        | |  |     |||     ||  ||| |   | | |||  |                                                           
GCTCTACAGGCCTCCTCGCTGCTCTCACTGCTCGGTGTGCAACAATTGCGTGGAGCGTTTTGATCACCACTGTCCATGGGTTGGACAATGCATTGGCCAAgtaagct------ctacttcttcctgttatcacttacagaccagctttccccttctcttgcag-----------------------------------------------------------