Sequence
atgc intronic sequence ATGC exonic sequence...agctgaatttgatgagataagataaacccaggagaaaactctcctctctctctctctccttattttttttttcattttttgtcttctccttgtgtatcagGAAAATGGCAGAGCTTGGGTATCACAGAAGCTCCAAGAAGTGCAAAGAAAAATTCGAGAACGTGTACAAGTACCACAAGAGAACCAAAGAAGGTCGAAGT
Basic information
species | Glycine max |
transcript | GLYMA20G30640.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|209712901|gb|BW679178.1|BW679178EST: GCGTTTCGAGATGCAAGTGTTAAAGGTCCCTTGTGGGAAGAAGTATCCAG GAAAATGGCAGAGCTTGGGTATCACAGAAGCTCCAAGAAGTGCAAAGAAAA
genomic: GCGTTTCGAGATGCAAGTGTTAAAGGTCCCTTGTGGGAAGAAGTATCCAGgtatgcgtca ... tgtgtatcagGAAAATGGCAGAGCTTGGGTATCACAGAAGCTCCAAGAAGTGCAAAGAAAA
EST:
gi|213588520|gb|DB957489.1|DB957489EST: GCGTTTCGAGATGCAAGTGTTAAAGGTCCCTTGTGGGAAGAAGTATCCAG GAAAATGGCAGAGCTTGGGTATCACAGAAGCTCCAAGAAGTGCAAAGAAAA
genomic: GCGTTTCGAGATGCAAGTGTTAAAGGTCCCTTGTGGGAAGAAGTATCCAGgtatgcgtca ... tgtgtatcagGAAAATGGCAGAGCTTGGGTATCACAGAAGCTCCAAGAAGTGCAAAGAAAA
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.ctctctctctctccttattttttttttcattttttgtcttctccttgtgtatcagGAAAATGGCAGAGCTTGGGTATCACAGAAGCTCCAAGAAGTGCAAAGAAAAATTCGAGAACGTGTACAAGTACCACAAGAGAACCAAAGAAGGTCGAAGT
tctctccttatttttt CT-rich tract
ttattttttttttcat TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
agctgaatttgatgagataagataaacccaggagaaaactctcctctctctctctctccttattttttttttcattttttgtcttctccttgtgtatcagGAAAATGGCAGAGCTTGGGTATCACAGAAGCTCCAAGAAGTGCAAAGAAAAATTCGAGAACGTGTACAAGTACCACAAGAGAACCAAAGAAGGTCGAAGT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
agctgaa
- - - - -tgatgag
- - - - - - - - - - - -aaaccca
- - - - - - - - - - - - - - - ggagaaaa