1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
gttgttaatctatctatagcttagcagtgttttaagttgtttgttcctcggtgtatattatttggcctaatcattgttcctctgagtctaatcatttagttcaaaattttctgattgtgcagATACTGTGTTGTTTTTGACCCGCTGGATGGTTCCTCTAACATTGATTGTGGTGTTTCAATTGGCACA
species | Glycine max |
transcript | GLYMA20G30620.2 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: TCTGAAGAAGATGAGGAAGCAACATTTGTGGAACCTTCTAAGCGTGGAAA ATACTGTGTTGTTTTTGACCCGCTGGATGGTTCCTCTAACATTGATTGTGGEST: gi|120531951|gb|EH260084.1|EH260084
genomic: TCTGAAGAAGATGAGGAAGCAACATTTGTGGAACCTTCTAAGCGTGGAAAgttgttaatc ... gattgtgcagATACTGTGTTGTTTTTGACCCGCTGGATGGTTCCTCTAACATTGATTGTGG
EST: TCTGAAGAAGATGAGGAAGCAACATTTGTGGAACCTTCTAAGCGTGGACA ATACTGTGTAGTTTTTGACCCGCTGGATGGTTCCTCTAACATTGATTGTGGEST: gi|120529729|gb|EH257863.1|EH257863
genomic: TCTGAAGAAGATGAGGAAGCAACATTTGTGGAACCTTCTAAGCGTGGAAAgttgttaatc ... gattgtgcagATACTGTGTTGTTTTTGACCCGCTGGATGGTTCCTCTAACATTGATTGTGG
EST: TCTGAAGAAGATGAGGAAGCAACATTTGTGGAACCTTCTAAGCGTGGAAA ATACTGTGTTGTTTTTGACCCGCTGGATGGTTCCTCTAACATTGATTGTGGEST: gi|192316335|gb|FK011680.1|FK011680
genomic: TCTGAAGAAGATGAGGAAGCAACATTTGTGGAACCTTCTAAGCGTGGAAAgttgttaatc ... gattgtgcagATACTGTGTTGTTTTTGACCCGCTGGATGGTTCCTCTAACATTGATTGTGG
EST: TCTGAAGAAGATGAGGAAGCAACATTTGTGGAACCTTCTAAGCGTGGAAA ATACTGTGTTGTTTTTGACCCGCTGGATGGTTCCTCTAACATTGATTGTGGEST: gi|20497840|gb|BQ272770.1|BQ272770
genomic: TCTGAAGAAGATGAGGAAGCAACATTTGTGGAACCTTCTAAGCGTGGAAAgttgttaatc ... gattgtgcagATACTGTGTTGTTTTTGACCCGCTGGATGGTTCCTCTAACATTGATTGTGG
EST: TCTGAAGAAGATGAGGAAGCAACATTTGTGGAACCTTCTAAGCGTGGAAA ATACTGTGTTGTTTTTGACCCGCTGGATGGTTCCTCTAACATTGATTGTGGEST: gi|209707338|gb|BW670901.1|BW670901
genomic: TCTGAAGAAGATGAGGAAGCAACATTTGTGGAACCTTCTAAGCGTGGAAAgttgttaatc ... gattgtgcagATACTGTGTTGTTTTTGACCCGCTGGATGGTTCCTCTAACATTGATTGTGG
EST: TCTGAAGAAGATGAGGAAGCAACATTTGTGGAACCTTCTAAGCGTGGAAA ATACTGTGTTGTTTTTGACCCGCTGGATGGTTCCTCTAACATTGATTGTGG
genomic: TCTGAAGAAGATGAGGAAGCAACATTTGTGGAACCTTCTAAGCGTGGAAAgttgttaatc ... gattgtgcagATACTGTGTTGTTTTTGACCCGCTGGATGGTTCCTCTAACATTGATTGTGG
taatcattgttcctctgagtctaatcatttagttcaaaattttctgattgtgcagATACTGTGTTGTTTTTGACCCGCTGGATGGTTCCTCTAACATTGATTGTGGTGTTTCAATTGGCACA
ttctgat putative branch site (score: 3)
ttttctg CT-rich tract
taatcatttagttcaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gttgttaatctatctatagcttagcagtgttttaagttgtttgttcctcggtgtatattatttggcctaatcattgttcctctgagtctaatcatttagttcaaaattttctgattgtgcagATACTGTGTTGTTTTTGACCCGCTGGATGGTTCCTCTAACATTGATTGTGGTGTTTCAATTGGCACA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA