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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatgatgttttttttttcagaataaattgtatcattttcaaatatattgttttggtttccaattgcaaaagctaaaagtaatctcactgcaatttgaacctgtatcagTTTTGATGCGATCCATTCGTGAAGATATTGAAAAGGAACATCCCTCAATTCAAAAAAGTGATGTTGTTGTTTTCTTTCAAGTGGCTGAATTTGTCACTTC

Basic information

species Glycine max
transcript GLYMA20G30420.1
intron # 6
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA20G30420.1 (Glycine max), 3'ss of exon 6
lower sequence: AT5G52910.1 (Arabidopsis thaliana), 3'ss of exon 5
--------------------------------------gtatgatgttttttttttcaga--ataaattgtatcattttcaaatatattgttttggtttccaat-tgcaaaagctaaaagtaatctcactgcaatttgaacctgtatcagTTTTGATGCGATCCATTCGTGAAGATATTGAAAAGGAACATCCCTCAATTCAAAAAAGTGATGTTGTTGTTTTCTTTCAAGTGGCTGAATTTGTCACTTC-----------
                                      ||  |  |  | |  |   |||  | | | | || ||   ||   | | |    |||||||  | | | |  | ||| |   | ||  ||  | |   |     | | | |||| ||||||  ||  |  ||||||||||||||||||| |||||||| |||||||| || ||  |||||  |||||| ||||| ||| | |   |||| ||           
gttttgaagttgctgcatgatttcatcaatcagtttatgtcaggcggatataatggtagatgacacaatataacaacctcttttgtttatacttggttttaagtatcctgatgctgatgctgatgccagcgtaccata----tctcttagttctgatgcagTCATTATGTGAAGATATTGAAAAGGAGCATCCCTCCATTCAAAATAGCGACATTGTTACTTTCTTCCAAGTTGCTCAGTCCATCACCTCTTTTCAGTTTC

upper sequence: GLYMA20G30420.1 (Glycine max), 3'ss of exon 6
lower sequence: Vv16s0050g02160.t01 (Vitis vinifera), 3'ss of exon 3
gtatgatgttttttttttcagaataaat-tgtatcattttcaaatatattgttttggtttccaattgcaaaagctaaaagtaatctcactgcaatttgaacctgtatcagTTTTGATGCGATCCATTCGTGAAGATATTGAAAAGGAACATCCCTCAATTCAAAAAAGTGATGTTGTTGTTTTCTTTCAAGTGGCTGAATTTGTCACTTC
||||    ||| |  |   |   | | | | | | | |||    |   || | | |||||   |||         | |  || |||   || || |      |||||||||| ||||||  || ||| |||| || |||||||| |||||||   ||||||| || || ||||| |||||||||||||| ||  || | || || || ||
gtatatcttttgtaatgaaatggtcattgttttttactttgttcttgcttctctcggttttacattattgtgctgatacatagtctgcatgtaaatgtgttgtgtatcagTTCTGATGCAGTCTATTTGTGAGGACATTGAAAAAGAACATCATGCAATTCAGAACAGCGATGTGGTTGTTTTCTTTCAGGTTTCTCAGTTCGTTACATC


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ggtttccaattgcaaaagctaaaagtaatctcactgcaatttgaacctgtatcagTTTTGATGCGATCCATTCGTGAAGATATTGAAAAGGAACATCCCTCAATTCAAAAAAGTGATGTTGTTGTTTTCTTTCAAGTGGCTGAATTTGTCACTTC
                           atctcac  putative branch site (score: 3)
                   taaaagtaat  TA-rich tract