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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagtgcaagttcaacatatagtcatatatatagatgttaattgaacatagttgttcccatcttagaattctttagatttttggagttctaacatttcaacgctttgtttatggcagGAGAATGAGTTAAGGAATCTGCAAAAGGGGAAGGAGAAGATGAAGATAAATGAGAAGGGATTAAAGTCGATCCACTGTCACTGTAAAACCTTTTATACTA

Basic information

species Glycine max
transcript GLYMA20G30370.1
intron # 1
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|58017206|gb|CX703948.1|CX703948
EST:     TTCTGAAAGCTCAATATACGAAGCAGTTCTCCATTGCAAAAGATCCATTG                         GAGAATGAGTTAAGGAATCTGCAAAAGGGGAAGGAGAAGATGAAGATAAAT
genomic: TTCTGAAAGCTCAATATACGAAGCAGTTCTCCATTGCAAAAGATCCATTGgtaagtgcaa ... tttatggcagGAGAATGAGTTAAGGAATCTGCAAAAGGGGAAGGAGAAGATGAAGATAAAT
EST: gi|58017378|gb|CX704120.1|CX704120
EST:     TTCTGAAAGCTCAATATACGAAGCAGTTCTCCATTGCAAAAGATCCATTG                         GAGAATGAGTTAAGGAATCTGCAAAAGGGGAAGGAGAAGATGAAGATAAAT
genomic: TTCTGAAAGCTCAATATACGAAGCAGTTCTCCATTGCAAAAGATCCATTGgtaagtgcaa ... tttatggcagGAGAATGAGTTAAGGAATCTGCAAAAGGGGAAGGAGAAGATGAAGATAAAT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttagaattctttagatttttggagttctaacatttcaacgctttgtttatggcagGAGAATGAGTTAAGGAATCTGCAAAAGGGGAAGGAGAAGATGAAGATAAATGAGAAGGGATTAAAGTCGATCCACTGTCACTGTAAAACCTTTTATACTA
                        ttctaac  putative branch site (score: 1)
                                        ctttgttt  putative PPT
     attctttagattttt  TA-rich tract