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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagccatttgaaattttatactgttttttgtcgagttaatttggtgtcattcttcaaaatatatatgggtgaaaaaaaaaaacaggatctttacctgtaaaattcatgcattaatttttcactcctaatagtaaaatgctatatcttgtatatcttaatatgtgcacttccttttggtcttgacattttctgaactagGTCTCCACTGCACATCCCGCATGTAGCACTTCCCGAGGAATGCGTTCATCAGGTTGCTTCTGCTTTAACAATTGAAATTAACCGAGCCTTCGTTGTTGTG

Basic information

species Glycine max
transcript GLYMA20G30340.1
intron # 2
splice site 3'
intron type U2


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tcttgtatatcttaatatgtgcacttccttttggtcttgacattttctgaactagGTCTCCACTGCACATCCCGCATGTAGCACTTCCCGAGGAATGCGTTCATCAGGTTGCTTCTGCTTTAACAATTGAAATTAACCGAGCCTTCGTTGTTGTG
                                  tcttgac  putative branch site (score: 3)
                                        cattttct  CT-rich tract
     tatatcttaatatgt  TA-rich tract