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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGAAAATGGTATGCCATGTAACCGCAGATAACCTCTCAGCAGATTTGTGGGCATGGCGAAAATACGGACAAAAACCAATTAAGGGTTCTCCATATCCAAGgtatccataatccatcatattagtagtatatatactacacacatagacttatatttataatcattaccgattttctcatccattttccgttagtttagtttctcaggaaaatgctaaaacttagtttcatacatgtatttctag

Basic information

species Glycine max
transcript GLYMA20G30290.1
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA20G30290.1 (Glycine max), 5'ss of exon 3
lower sequence: AT5G52830.1 (Arabidopsis thaliana), 5'ss of exon 2
AGAAAATGGTATGCCATGTAACCGCAGATAACCTCTCAGCAGATTTGTGGGCATGGCGAAAATACGGACAAAAACCAATTAAGGGTTCTCCATATCCAAGgtatccataatccatcatattagtagtatatatactacacacatagacttatatttataatcattaccg-attttctcatccattttccgt-tagtttagtttctcaggaaaatgctaaaacttagtttcatacatgtatttctag
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AAAGAACCATATGTCATGTAACGCAAGAGAATCTTTCTTCTGATTTGTGGGCTTGGCGTAAATACGGTCAAAAACCCATCAAAGGCTCTCCTTATCCAAGgt---tatcatcaatctttttttcaaaattttctcaagaaaaaaatattaacatttttt-taattaatgtgttaattaatcgagttattacataaaacag----------------------------------------------