Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGGACCCTGCTAAGAAGACTCGCAAGCCTTACACTATTACCAAGTCTAGGGAGAGTTGGACCGAACCTGAGCACGACAAGTTCCTCGAAGCTCTTCAGTTgtatgtgaatattactacctttttaatttgttttgtactagaatgtagtgtgtggatttttaagctcaattgagacatgggttttagttgtaaaccgtat...

Basic information

species Glycine max
transcript GLYMA20G30250.1
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA20G30250.1 (Glycine max), 5'ss of exon 1
lower sequence: LOC_Os06g45840.2 (Oryza sativa), 5'ss of exon 1
AGGACCCTGCTAAGAAGACTCGCAAGCCTTACACTATTACCAAGTCTAGGGAGAGTTGGACCGAACCTGAGCACGACAAGTTCCTCGAAGCTCTTCAGTTgtatgtgaat--attactacctttttaatttgttttgtactagaatgtagtgtgtggatttttaagctcaattgagacatgggttttagttgtaaaccgtat
 |||    || | ||||    | ||||| ||||| || |||||||| |||||||| ||||| || || |||||||||||||||||||| || || ||| |||  |||     | | || ||    |   | | | |       |     | | | |          | |   ||      |    || |  |     |||  
GGGAGGAGGCGAGGAAGGTGAGGAAGCCGTACACCATCACCAAGTCGAGGGAGAGCTGGACGGAGCCCGAGCACGACAAGTTCCTCGAGGCGCTGCAGCTgtgagtgcccccaattctgcccccgtctctcgctctccctcttatctctgcgcgcgcgcggcgcgccccccgtggttggggatagtttggcggctttcgt--

upper sequence: GLYMA20G30250.1 (Glycine max), 5'ss of exon 1
lower sequence: LOC_Os06g01670.1 (Oryza sativa), 5'ss of exon 1
AGGACCCTGCTAAGAAGACTCGCAAGCCTTACACTATTACCAAGTCTAGGGAGAGTTGGACCGAACCTGAGCACGACAAGTTCCTCGAAGCTCTTCAGTTgtatgtgaatat-tactacctttttaatttgttttgta--ctagaatgtagtgtgtgg-atttttaagctcaattgagacatgggttttagttgtaaaccgtat
| |||   |  | || |    | ||||| ||||| || ||||||||  ||||||| |||||||| || |||||||||||||||||||| || || ||| |||| |     ||   |   ||| | | | |    ||    |  |  |  |   | ||  | || |     |||||   | |||   |||   ||    | ||||
ACGACGGGGGAAGGAGGGTGAGGAAGCCCTACACCATCACCAAGTCGCGGGAGAGCTGGACCGACCCCGAGCACGACAAGTTCCTCGAGGCGCTGCAGCTgtaagcatccatgcgccttcttctaactcttaactgctgccctgcctccatcttctgctacttctccatccaatttc-atatgccgttt---tgcctgctgtat

upper sequence: GLYMA20G30250.1 (Glycine max), 5'ss of exon 1
lower sequence: GRMZM2G135052_T01 (Zea mays), 5'ss of exon 1
AGGACCCTGCTAAGAAGACTCGCAAGCCTTACACTATTACCAAGTCTAGGGAGAGTTGGACCGAACCTGAGCACGACAAGTTCCTCGAAGCTCTTCAGTTgtatgtgaata---ttactacctttttaatttgttttgtactagaatgtagtgtgtggatttttaagctcaattgagacatgggttttagttgtaaaccgtat
||||     |   ||     |||||||| ||||| || ||||||||  | ||||| |||||||| || |||||||||||||||||||| || || ||| |||  ||  |     |  || |||   |   |   |      |    |   | |   |    ||    ||   |||   ||    |  ||  |  |||      
AGGAGGGCCCCCGGAGAGTGCGCAAGCCCTACACCATCACCAAGTCGCGCGAGAGCTGGACCGACCCCGAGCACGACAAGTTCCTCGAGGCACTGCAGCTgtgagtcgacccactctctccctccctccctccctcccccatctcctccggcggcggcggcttacctctgctttgtctcactaatggtatgttcaaagtt---

upper sequence: GLYMA20G30250.1 (Glycine max), 5'ss of exon 1
lower sequence: GRMZM2G057408_T01 (Zea mays), 5'ss of exon 1
AGGACCCTGCTAAGAAGACTCGCAAGCCTTACACTATTACCAAGTCTAGGGAGAGTTGGACCGAACCTGAGCACGACAAGTTCCTCGAAGCTCTTCAGTTgtatgtg-----aatattactacctttttaatttgttttgtactagaatgtagtgtgtggatttttaagctcaattgagacatgggttttagttgtaaaccgtat
||||    | |  ||||    | ||||| ||||| || ||||||||  ||||||| ||||| || || |||||||||||||||||||| || || ||| |||  |||     |      || |  |       |||     | | |   ||||   |||   |||  |  | | |  ||    || |  | | | |    |    
AGGAGGAGGTTCGGAAGGTCAGGAAGCCGTACACCATCACCAAGTCGCGGGAGAGCTGGACGGAGCCGGAGCACGACAAGTTCCTCGAGGCCCTGCAGCTgtgagtgccccgaccccctctgcgctccccccctgtccccgattcgggagtaggtagtgccgtttcga--tgagtgaagtagcggttacttgctctgttgcc---

upper sequence: GLYMA20G30250.1 (Glycine max), 5'ss of exon 1
lower sequence: GRMZM5G833032_T03 (Zea mays), 5'ss of exon 1
AGGACCCTGCTAAGAAGACTCGCAAGCCTTACACTATTACCAAGTCTAGGGAGAGTTGGACCGAACCTGAGCACGACAAGTTCCTCGAAGCTCTTCAGTTgtatgtgaatattactacctt-tttaatttgttttgtactagaatgtagtgtgtggatttttaagctcaa--ttgagacatgggttttagttgtaaaccgtat
||||       ||||||   || ||||| ||||| || ||||||||  ||||||| ||||| || |  |||||||||||||||||||| || || ||| |||| |   |    ||  |||   ||   ||   || || |    | |  ||   |  ||      | ||    |||  |   ||  || || ||  |   |  
AGGAAGTGAGCAAGAAGGTGCGGAAGCCGTACACAATCACCAAGTCCCGGGAGAGCTGGACGGAGCAGGAGCACGACAAGTTCCTCGAGGCCCTGCAGCTgtaagcagacgcgaccccctgacttggattccattttattttggt-tgatgctcgctttgcggttcacaggcctgaagcgccggactttgtggtgtattct--

upper sequence: GLYMA20G30250.1 (Glycine max), 5'ss of exon 1
lower sequence: GRMZM2G118693_T02 (Zea mays), 5'ss of exon 1
AGGACCCTGCTAAGAAGACTCGCAAGCCTTACACTATTACCAAGTCTAGGGAGAGTTGGACCGAACCTGAGCACGACAAGTTCCTCGAAGCTCTTCAGTTgtatgtgaatattactacctttttaatttgt-tttgtactag--aatgtagtgtgtggatttttaagctcaattgagacatg-ggttttagttgtaaaccgtat
||||  |    ||||||   || ||||| ||||| || ||||||||  ||||||| ||||| || |  |||||||||||||||||||| || || ||| |||| |        ||  |     |   ||   ||| |  |     |||  ||     |   |  ||||    | | |   || ||| ||   |||       ||
AGGAAGCCAGCAAGAAGGTGCGGAAGCCGTACACCATCACCAAGTCGCGGGAGAGCTGGACGGAGCAGGAGCACGACAAGTTCCTCGAGGCCCTGCAGCTgtaagcaggagcaacccctgacatgggttccatttattttgattgatgcggttcacaggccta-aagc---gtcgggctttgtggtgttttctgtctttttgat

upper sequence: GLYMA20G30250.1 (Glycine max), 5'ss of exon 1
lower sequence: AT5G52660.2 (Arabidopsis thaliana), 5'ss of exon 1
AGGACCCTGCTAAGAAGACTCGCAAGCCTTACACTATTACCAAGTCTAGGGAGAGTTGGACCGAACCTGAGCACGACAAGTTCCTCGAAGCTCTTCAGTTgtatgtgaatattactacctttttaatttgttttgtactagaatgtagtgtgtggatttttaagctcaattgag---acatgggttttagttgtaaaccgtat-
||||      |||||||| | | |||||||| |||||||| |||||||| ||||| ||||| || |||||||| || || ||||| ||||||||||| ||||    || | ||  |   ||| |  |||    | |      |     | | ||||  ||| |  |     ||     |||   |||| ||||   |  || | 
AGGATTTGAGTAAGAAGATTAGGAAGCCTTATACTATTACTAAGTCTAGAGAGAGCTGGACGGAGCCTGAGCATGATAAATTCCTTGAAGCTCTTCAATTgt----gagttttgttcattttgtgctttaccatttctcgttaatggctatttggagatttgatttgggaagaattagcatcaattttggttgattagggtttg

upper sequence: GLYMA20G30250.1 (Glycine max), 5'ss of exon 1
lower sequence: Vv16s0050g01180.t01 (Vitis vinifera), 5'ss of exon 1
AGGACCCTGCTAAGAAGACTCGCAAGCCTTACACTATTACCAAGTCTAGGGAGAGTTGGACCGAACCTGAGCACGACAAGTTCCTCGAAGCTCTTCAGTTgtatgtgaatattactacctttttaatttgttttgtactagaatgtagtgtgtggatttttaagctcaattgagacatgggttttagttgtaaaccgtat
|||| || ||||||||||  || ||||| ||||||||||||||||  || ||||  |||||||| || |||||||||||||||||||||||||||||| |||| |    |   |||    |     |||| || |  |     | |  |||||    ||    | | | ||      |    | |   |||  |   | |
AGGATCCGGCTAAGAAGATCCGGAAGCCCTACACTATTACCAAGTGCAGAGAGAAGTGGACCGAGCCCGAGCACGACAAGTTCCTCGAAGCTCTTCAGCTgtaagacgcttcaactcgaatagggttttggttggggcattttttttatgtgtttgattgcgtgtttatttttttgtttatctctttgtgttgagaattt

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|22524646|gb|BU083457.1|BU083457
EST:     GAGAGTTGGACCGAACCTGAGCACGACAAGTTCCTCGAAGCTCTTCAGTT                         ATTTGACCGTGACTGGAAAAAGATTGAAGCATTTGTTGGATCAAAGACAGT
genomic: GAGAGTTGGACCGAACCTGAGCACGACAAGTTCCTCGAAGCTCTTCAGTTgtatgtgaat ... tctgtatcagATTTGACCGTGACTGGAAAAAGATTGAAGCATTTGTTGGATCAAAGACAGT
EST: gi|22524561|gb|BU083372.1|BU083372
EST:     GAGAGTTGGACCGAACCTGAGCACGACAAGTTCCTCGAAGCTCTTCAGTT                         ATTTGACCGTGACTGGAAAAAGATTGAAGCATTTGTTGGATCAAAGACAGT
genomic: GAGAGTTGGACCGAACCTGAGCACGACAAGTTCCTCGAAGCTCTTCAGTTgtatgtgaat ... tctgtatcagATTTGACCGTGACTGGAAAAAGATTGAAGCATTTGTTGGATCAAAGACAGT