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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtagtgtttaagaattttgtttaacacatgttagcttaaaataatgatattgctaactaatcaccgatgttataactttttacttttattgtgcagAGTTTATTAGGAGGCCTCCTATAGACATGAATTCTAAATTAGTTCACAAGATAATTGTAGCTAATGAAACTGAGAGAGTTAAGGCCTATATTAATTCTGG

Basic information

species Glycine max
transcript GLYMA20G30200.1
intron # 3
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|12497303|gb|BG047499.1|BG047499
EST:     GTTGGGAATTGCTGGAAGCAAGCTGCTGTCTGGCTTTCAACAAACACTTG                         AGTTTATTAAGAGGCCTCCTATAGACATGAATTCTAAATTAGTTCACAATA
genomic: GTTGGGAATTGCTGGAAGCAAGCTGCTGTCTGGCTTTCAACAAGCACTTGgtagtgttta ... tattgtgcagAGTTTATTAGGAGGCCTCCTATAGACATGAATTCTAAATTAGTTCACAAGA






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

taatgatattgctaactaatcaccgatgttataactttttacttttattgtgcagAGTTTATTAGGAGGCCTCCTATAGACATGAATTCTAAATTAGTTCACAAGATAATTGTAGCTAATGAAACTGAGAGAGTTAAGGCCTATATTAATTCTGG
                                  ctttttacttttatt  CT-rich tract
 atgttataacttttta  TA-rich tract