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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGAAGGATACATGTATACCAGAGGAGAAGATGCTGAAAGATCCAAGGAGACTCTATGCTCCCGGTCGCCTTTATCATATTGTTGAGAGAAAGCCTTTCAGgtatggttaaggttccaataagagcttatgcattgcagaattttactgtacttttagaaatcaccagcagtttaaggccctggctacaattgttttccct...

Basic information

species Glycine max
transcript GLYMA20G30010.1
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA20G30010.1 (Glycine max), 5'ss of exon 1
lower sequence: AT3G49050.1 (Arabidopsis thaliana), 5'ss of exon 3
TGAAGGATACATGTATACCAGAGGAGAAGATGCTGAAAGATCCAAGGAGACTCTATGCTCCCGGTCGCCTTTATCATATTGTTGAGAGAAAGCCTTTCAGgta--tggttaaggttccaataagagcttatgcattgc--agaattttactgtacttttagaaatcaccagcagtttaaggccctggctacaattgttttccct
|||||||||||||| | |||||| | |||||||| |||||||| ||  | || |||||||| |||||| | ||||| || || || |||||||||| ||||||  |     |     | |||       |   ||| |  |       |  || ||     ||  ||| | |    | ||          ||| ||| ||    
TGAAGGATACATGTGTTCCAGAGCAAAAGATGCTCAAAGATCCTAGACGGCTTTATGCTCCTGGTCGCATGTATCACATCGTCGAAAGAAAGCCTTGCAGgtacataacacacaaatctatagatttacacatattacttaagggaccatggttctaaagcaacccacaatctcacttagtttgcaatatcaaatgtctt----

upper sequence: GLYMA20G30010.1 (Glycine max), 5'ss of exon 1
lower sequence: Vv16s0050g00620.t01 (Vitis vinifera), 5'ss of exon 3
TGAAGGATACATGTATACCAGAGGAGAAGATGCTGAAAGATCCAAGGAGACTCTATGCTCCCGGTCGCCTTTATCATATTGTTGAGAGAAAGCCTTTCAGgtatggttaaggttccaataagagct-tatgcattgcagaattttactgtacttttagaaatcaccagcagtttaaggccctggctacaattgttttccct-
|||| ||||||||  | || || ||||||||| | | |||||||||||| || ||||| || |||||||| ||||| |||||||||||||||||||||||||||  | |       || ||   |  | | || |  ||    | | |||| || |  |||  |  |  |   |||     |    | || || |     | 
TGAAAGATACATGCGTCCCTGAAGAGAAGATGTTCAGAGATCCAAGGAGGCTGTATGCACCTGGTCGCCTCTATCACATTGTTGAGAGAAAGCCTTTCAGgtatcttcagatgcataagaaacacagtttccactcaagttgatcattgtagttgtgaaaa--ataaaaaaaataatatgattatgagaaatggtggaattg