1 5' 3' | 2 5' 3' | 3 5' 3' |
...taattcatcctcatccactatagaaataattaagaaaggcatcagaaactttgtttttatatcttatatgtggtcataatattatattgattcaaaacagAAAACAAGCAAGAGGGTGCACTTTGTGAGGAACCTCATAAGAGAGGTTGCTGGTTTTGCACCCTATGAAAAGCGTATAACTGAGTTGCTGAAGGTTGGGA
species | Glycine max |
transcript | GLYMA20G29990.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: CCCTCAGATCGTAAGGGG AAAACAAGCAAGAGGGTGCACTTTGTGAGGAACCTCATAAGAGAGGTTGCTEST: gi|58023808|gb|CX710549.1|CX710549
genomic: CCCTCAGATCGTAAGGGGgtaagttttt ... ttcaaaacagAAAACAAGCAAGAGGGTGCACTTTGTGAGGAACCTCATAAGAGAGGTTGCT
EST: ACGTCGTCACCAAGAAGGAATTGCCCCCACGCCCCTCAGATCGTAAGGGG AAAACAAGCAAGAGGGTGCACTTTGTGAGGAACCTCATAAGAGAGGTTGCTEST: gi|213593628|gb|DB977460.1|DB977460
genomic: ACGTCGTCACCAAGAAGGAATTGCCCCCACGCCCCTCAGATCGTAAGGGGgtaagttttt ... ttcaaaacagAAAACAAGCAAGAGGGTGCACTTTGTGAGGAACCTCATAAGAGAGGTTGCT
EST: ACGTCGTCACCAAGAAGGAATTGCCCCCACGCCCCTCAGATCGTAAGGGG AAAACAAGCAAGAGGGTGCACTTTGTGAGGAACCTCATAAGAGAGGTTGCTEST: gi|254326250|gb|GR840842.1|GR840842
genomic: ACGTCGTCACCAAGAAGGAATTGCCCCCACGCCCCTCAGATCGTAAGGGGgtaagttttt ... ttcaaaacagAAAACAAGCAAGAGGGTGCACTTTGTGAGGAACCTCATAAGAGAGGTTGCT
EST: ACGTCGTCACCAAGAAGGAATTGCCCCCACGCCCCTCAGATCGTAAGGGG AAAACAAGCAAGAGGGTGCACTTTGTGAGGAACCTCATAAGAGAGGTTGCTEST: gi|20811927|gb|BQ296405.1|BQ296405
genomic: ACGTCGTCACCAAGAAGGAATTGCCCCCACGCCCCTCAGATCGTAAGGGGgtaagttttt ... ttcaaaacagAAAACAAGCAAGAGGGTGCACTTTGTGAGGAACCTCATAAGAGAGGTTGCT
EST: ACGTCGTCACCAAGAAGGAATTGCCCCCACGCCCCTCAGATCGTAAGGGG AAAACAAGCAAGAGGGTGCACTTTGTGAGGAACCTCATAAGAGAGGTTGCTEST: gi|21600582|gb|BQ610913.1|BQ610913
genomic: ACGTCGTCACCAAGAAGGAATTGCCCCCACGCCCCTCAGATCGTAAGGGGgtaagttttt ... ttcaaaacagAAAACAAGCAAGAGGGTGCACTTTGTGAGGAACCTCATAAGAGAGGTTGCT
EST: ACGTCGTCACCAAGAAGGAATTGCCCCCACGCCCCTCAGATCGTAAGGGG AAAACAAGCAAGAGGGTGCACTTTGTGAGGAACCTCATAAGAGAGGTTGCTEST: gi|15815416|gb|BI787691.1|BI787691
genomic: ACGTCGTCACCAAGAAGGAATTGCCCCCACGCCCCTCAGATCGTAAGGGGgtaagttttt ... ttcaaaacagAAAACAAGCAAGAGGGTGCACTTTGTGAGGAACCTCATAAGAGAGGTTGCT
EST: ACGTCGTCACCAAGAAGGAATTGCCCCCACGCCCCTCAGATCGTAAGGGG AAAACTT-CAAGAGGGTGCACTTTGTGAGGAACCTCATAAGAGAGGTTGCTEST: gi|6719054|gb|AW306701.1|AW306701
genomic: ACGTCGTCACCAAGAAGGAATTGCCCCCACGCCCCTCAGATCGTAAGGGGgtaagttttt ... ttcaaaacagAAAACAAGCAAGAGGGTGCACTTTGTGAGGAACCTCATAAGAGAGGTTGCT
EST: ACGTCGTCACCAAGAAGGAATTGCCCCCACGCCCCTCAGATCGTAAGGGG AAAACAAGCAAGAGGGTGCACTTTGTGAGGAACCTCATAAGAGAGGTTGCTEST: gi|4405693|gb|AI507842.1|AI507842
genomic: ACGTCGTCACCAAGAAGGAATTGCCCCCACGCCCCTCAGATCGTAAGGGGgtaagttttt ... ttcaaaacagAAAACAAGCAAGAGGGTGCACTTTGTGAGGAACCTCATAAGAGAGGTTGCT
EST: ACGTCGTCACCAAGAAGGAATTGCCCCCACGCCCCTCAGATCGTAAGGGG AAAACAAGCAAGAGGGTGCACTTTGTGAGGAACCTCATAAGAGAGGTTGCTEST: gi|23733318|gb|BU764850.1|BU764850
genomic: ACGTCGTCACCAAGAAGGAATTGCCCCCACGCCCCTCAGATCGTAAGGGGgtaagttttt ... ttcaaaacagAAAACAAGCAAGAGGGTGCACTTTGTGAGGAACCTCATAAGAGAGGTTGCT
EST: ACGTCGTCACCAAGAAGGAATTGCCCCCACGCCCCTCAGATCGTAAGGGG AAAACAAGCAAGAGGGTGCACTTTGTGAGGAACCTCATAAGAGAGGTTGCTEST: gi|209696804|gb|BW680425.1|BW680425
genomic: ACGTCGTCACCAAGAAGGAATTGCCCCCACGCCCCTCAGATCGTAAGGGGgtaagttttt ... ttcaaaacagAAAACAAGCAAGAGGGTGCACTTTGTGAGGAACCTCATAAGAGAGGTTGCT
EST: ACGTCGTCACCAAGAAGGAATTGCCCCCACGCCCCTCAGATCGTAAGGGG AAAACAAGCAAGAGGGTGCACTTTGTGAGGAACCTCATAAGAGAGGTTGCTEST: gi|10847478|gb|BF070160.1|BF070160
genomic: ACGTCGTCACCAAGAAGGAATTGCCCCCACGCCCCTCAGATCGTAAGGGGgtaagttttt ... ttcaaaacagAAAACAAGCAAGAGGGTGCACTTTGTGAGGAACCTCATAAGAGAGGTTGCT
EST: ACGTCGTCACCAAGAAGGAATTGCCCCCACGCCCCTCAGATCGTAAGGGG AAAACAAGCAAGAGGGTGCACTTTGTGAGGAACCTCATAAGAGAGGTTGCTEST: gi|6718758|gb|AW306405.1|AW306405
genomic: ACGTCGTCACCAAGAAGGAATTGCCCCCACGCCCCTCAGATCGTAAGGGGgtaagttttt ... ttcaaaacagAAAACAAGCAAGAGGGTGCACTTTGTGAGGAACCTCATAAGAGAGGTTGCT
EST: ACGTCGTCACCAAGAAGGAATTGCCCCCACGCCCCTCAGATCGTAAGGGG AAAACAAGCAAGAGGGTGCACTTTGTGAGGAACCTCATAAGAGAGGTTGCTEST: gi|31469531|gb|CD411559.1|CD411559
genomic: ACGTCGTCACCAAGAAGGAATTGCCCCCACGCCCCTCAGATCGTAAGGGGgtaagttttt ... ttcaaaacagAAAACAAGCAAGAGGGTGCACTTTGTGAGGAACCTCATAAGAGAGGTTGCT
EST: ACGTCGTCACCAAGAAGGAATTGCCCCCACGCCCCTCAGATCGTAAGGGG AAAACAAGCAAGAGGGTGCACTTTGTGAGGAACCTCATAAGAGAGGTTGCTEST: gi|12773058|gb|BG237985.1|BG237985
genomic: ACGTCGTCACCAAGAAGGAATTGCCCCCACGCCCCTCAGATCGTAAGGGGgtaagttttt ... ttcaaaacagAAAACAAGCAAGAGGGTGCACTTTGTGAGGAACCTCATAAGAGAGGTTGCT
EST: ACGTCGTCACCAA-AAGGAATTGCCCCCACGCCCCTCAGATCGTAAGGGG AAAACAAGCAAGAGGGTGCACTTTGTGAGGAACCTCATAAGAGAGGTTGCTEST: gi|254318894|gb|GR828730.1|GR828730
genomic: ACGTCGTCACCAAGAAGGAATTGCCCCCACGCCCCTCAGATCGTAAGGGGgtaagttttt ... ttcaaaacagAAAACAAGCAAGAGGGTGCACTTTGTGAGGAACCTCATAAGAGAGGTTGCT
EST: ACGTCGTCACCAAGAAGGAATTGCCCCCACGCCCCTCAGATCGTAAGGGG AAAACAAGCAAGAGGGTGCACTTTGTGAGGAACCTCATAAGAGAGGTTGCTEST: gi|14990627|gb|BI316300.1|BI316300
genomic: ACGTCGTCACCAAGAAGGAATTGCCCCCACGCCCCTCAGATCGTAAGGGGgtaagttttt ... ttcaaaacagAAAACAAGCAAGAGGGTGCACTTTGTGAGGAACCTCATAAGAGAGGTTGCT
EST: ACGTCGTCACCAATAAGGAATTGCCCCCACGCCCCTCATATCGTAAGGGG AAAACAAGCAAGAGGGTGCACTTTGTGAGGAACCTCATAAGAGAGGTTGCTEST: gi|4313686|gb|AI460805.1|AI460805
genomic: ACGTCGTCACCAAGAAGGAATTGCCCCCACGCCCCTCAGATCGTAAGGGGgtaagttttt ... ttcaaaacagAAAACAAGCAAGAGGGTGCACTTTGTGAGGAACCTCATAAGAGAGGTTGCT
EST: ACGTCGTCACCAAGAAGGAATTGCCCCCACGCCCCTCAGATCGTAAGGGG AAAACAAGCAAGAGGGTGCACTTTGTGAGGAACCTCATAAGAGAGGTTGCTEST: gi|22933058|gb|BU550197.1|BU550197
genomic: ACGTCGTCACCAAGAAGGAATTGCCCCCACGCCCCTCAGATCGTAAGGGGgtaagttttt ... ttcaaaacagAAAACAAGCAAGAGGGTGCACTTTGTGAGGAACCTCATAAGAGAGGTTGCT
EST: ACGTCGTCACCAAGAAGGAATTGCCCCCACGCCCCTCAGATCGTAAGGGG AAAACAAGCAAGAGGGTGCACTTTGTGAGGAACCTCATAAGAGAGGTTGCTEST: gi|13791653|gb|BG654244.1|BG654244
genomic: ACGTCGTCACCAAGAAGGAATTGCCCCCACGCCCCTCAGATCGTAAGGGGgtaagttttt ... ttcaaaacagAAAACAAGCAAGAGGGTGCACTTTGTGAGGAACCTCATAAGAGAGGTTGCT
EST: ACGTCGTCACCAAGAAGGAATTGCCCCCACGCCCCTCAGATCGTAAGGGG AAAACAAGCAAGAGGGTGCACTTTGTGAGGAACCTCATAAGAGAGGTTGCTEST: gi|10232615|gb|BE801503.1|BE801503
genomic: ACGTCGTCACCAAGAAGGAATTGCCCCCACGCCCCTCAGATCGTAAGGGGgtaagttttt ... ttcaaaacagAAAACAAGCAAGAGGGTGCACTTTGTGAGGAACCTCATAAGAGAGGTTGCT
EST: ACGTCGTCACCAAGAAGGAATTGCCCCCACGCCCCTCAGATCGTAAGGGG AAAACAAGCAAGAGGGTGCACTTTGTGAGGAACCTCATAAGAGAGGTTGCTEST: gi|7283952|gb|AW596553.1|AW596553
genomic: ACGTCGTCACCAAGAAGGAATTGCCCCCACGCCCCTCAGATCGTAAGGGGgtaagttttt ... ttcaaaacagAAAACAAGCAAGAGGGTGCACTTTGTGAGGAACCTCATAAGAGAGGTTGCT
EST: ATGTCGTCACCAAGAAGGAATTGCCCCCACGCCCCTCGGATCGTAAGGGG AAAACAAGCAAGAGGGTGCACTTTGTGAGGAACCTCATAAGAGAGGTTGCTEST: gi|6718947|gb|AW306594.1|AW306594
genomic: ACGTCGTCACCAAGAAGGAATTGCCCCCACGCCCCTCAGATCGTAAGGGGgtaagttttt ... ttcaaaacagAAAACAAGCAAGAGGGTGCACTTTGTGAGGAACCTCATAAGAGAGGTTGCT
EST: ACGTCGTCACCAAGAAGGAATTGCCCCCACGCCCCTCAGATCGTAAGGGG AAAACAAGCAAGAGGGTGCACTTTGTGAGGAACCTCATAAGAGAGGTTGCTEST: gi|22932776|gb|BU549915.1|BU549915
genomic: ACGTCGTCACCAAGAAGGAATTGCCCCCACGCCCCTCAGATCGTAAGGGGgtaagttttt ... ttcaaaacagAAAACAAGCAAGAGGGTGCACTTTGTGAGGAACCTCATAAGAGAGGTTGCT
EST: ACGTCGTCACCAAGAAGGAATTGCCCCCACGCCCCTCAGATCGTAAGGGG AAAACAAGCAAGAGGGTGCACTTTGTGAGGAACCTCATAAGAGAGGTTGCTEST: gi|7030348|gb|AW460131.1|AW460131
genomic: ACGTCGTCACCAAGAAGGAATTGCCCCCACGCCCCTCAGATCGTAAGGGGgtaagttttt ... ttcaaaacagAAAACAAGCAAGAGGGTGCACTTTGTGAGGAACCTCATAAGAGAGGTTGCT
EST: ACGTCGTCACCAAGAAGGAATTGCCCCCACGCCCCTCAGATCGTAAGGGG AAAACAAGCAAGAGGGTGCACTTTGTGAGGAACCTCATAAGAGAGGTTGCTEST: gi|15287561|gb|BI471452.1|BI471452
genomic: ACGTCGTCACCAAGAAGGAATTGCCCCCACGCCCCTCAGATCGTAAGGGGgtaagttttt ... ttcaaaacagAAAACAAGCAAGAGGGTGCACTTTGTGAGGAACCTCATAAGAGAGGTTGCT
EST: ACGTCGTCACCAAGAAGGAATTGCCCCCACGCCCCTCAGATCGTAAGGGG AAAACAAGCAAGAGGGTGCACTTTGTGAGGAACCTCATAAGAGAGGTTGCTEST: gi|13790374|gb|BG652965.1|BG652965
genomic: ACGTCGTCACCAAGAAGGAATTGCCCCCACGCCCCTCAGATCGTAAGGGGgtaagttttt ... ttcaaaacagAAAACAAGCAAGAGGGTGCACTTTGTGAGGAACCTCATAAGAGAGGTTGCT
EST: ACGTCGTCACCAAGAAGGAATTGCCCCCACGCCCCTCAGATCGTAAGGGG AAAACAAGCAAGAGGGTGCACTTTGTGAGGAACCTCATAAGAGAGGTTGCTEST: gi|208078987|gb|GD876603.1|GD876603
genomic: ACGTCGTCACCAAGAAGGAATTGCCCCCACGCCCCTCAGATCGTAAGGGGgtaagttttt ... ttcaaaacagAAAACAAGCAAGAGGGTGCACTTTGTGAGGAACCTCATAAGAGAGGTTGCT
EST: ATGTCGTCACCAAGAAGGAATTGCCCCCACGCCCCTCGGATCGTAAGGGG AAAACAAGCAAGAGGGTGCACTTTGTGAGGAACCTCATAAGAGAGGTTGCTEST: gi|254345346|gb|GR851615.1|GR851615
genomic: ACGTCGTCACCAAGAAGGAATTGCCCCCACGCCCCTCAGATCGTAAGGGGgtaagttttt ... ttcaaaacagAAAACAAGCAAGAGGGTGCACTTTGTGAGGAACCTCATAAGAGAGGTTGCT
EST: ACGTCGTCACCAAGAAGGAATTGCCCCCACGCCCCTCAGATCGTAAGGGG AAAACAAGCAAGAGGGTGCACTTTGTGAGGAACCTCATAAGAGAGGTTGCTEST: gi|37996882|gb|CF808471.1|CF808471
genomic: ACGTCGTCACCAAGAAGGAATTGCCCCCACGCCCCTCAGATCGTAAGGGGgtaagttttt ... ttcaaaacagAAAACAAGCAAGAGGGTGCACTTTGTGAGGAACCTCATAAGAGAGGTTGCT
EST: ACGTCGTCACCAAGAAGGAATTGCCCCCACGCCCCTCAGATCGTAAGGGG AAAACAAGCAAGAGGGTGCACTTTGTGAGGAACCTCATAAGAGAGGTTGCTEST: gi|21887245|gb|BQ740458.1|BQ740458
genomic: ACGTCGTCACCAAGAAGGAATTGCCCCCACGCCCCTCAGATCGTAAGGGGgtaagttttt ... ttcaaaacagAAAACAAGCAAGAGGGTGCACTTTGTGAGGAACCTCATAAGAGAGGTTGCT
EST: ACGTCGTCACCAAGAAGGAATTGCCCCCACGCCCCTCAGATCGTAAGGGG AAAACAAGCAAGAGGGTGCACTTTGTGAGGAACCTCATAAGAGAGGTTGCTEST: gi|6134997|gb|AW133390.1|AW133390
genomic: ACGTCGTCACCAAGAAGGAATTGCCCCCACGCCCCTCAGATCGTAAGGGGgtaagttttt ... ttcaaaacagAAAACAAGCAAGAGGGTGCACTTTGTGAGGAACCTCATAAGAGAGGTTGCT
EST: ACGTCGTCACCAAGAAGGAATTGCCCCCACGCCCCTCAGATCGTAAGGGG AAAACAAGCAAGAGGGTGCACTTTGTGAGGAACCTCATAAGAGAGGTTGCTEST: gi|31462377|gb|CD404405.1|CD404405
genomic: ACGTCGTCACCAAGAAGGAATTGCCCCCACGCCCCTCAGATCGTAAGGGGgtaagttttt ... ttcaaaacagAAAACAAGCAAGAGGGTGCACTTTGTGAGGAACCTCATAAGAGAGGTTGCT
EST: ACGTCGTCACCAAGAAGGAATTGCCCCCACGCCCCTCAGATCGTAAGGGG AAAACAAGCAAGAGGGTGCACTTTGTGAGGAACCTCATAAGAGAGGTTGCTEST: gi|21600861|gb|BQ611192.1|BQ611192
genomic: ACGTCGTCACCAAGAAGGAATTGCCCCCACGCCCCTCAGATCGTAAGGGGgtaagttttt ... ttcaaaacagAAAACAAGCAAGAGGGTGCACTTTGTGAGGAACCTCATAAGAGAGGTTGCT
EST: GTCGTCACCAAGAAGGAATTGCCCCCACGCCCCTCAGATCGTAAGGGG AAAACAAGCAAGAGGGTGCACTTTGTGAGGAACCTCATAAGAGAGGTTGCTEST: gi|192298190|gb|FG992040.1|FG992040
genomic: GTCGTCACCAAGAAGGAATTGCCCCCACGCCCCTCAGATCGTAAGGGGgtaagttttt ... ttcaaaacagAAAACAAGCAAGAGGGTGCACTTTGTGAGGAACCTCATAAGAGAGGTTGCT
EST: AGATCGTAAGGGG AAAACAAGCAAGAGGGTGCACTTTGTGAGGAACCTCATAAGAGAGGTTGCT
genomic: AGATCGTAAGGGGgtaagttttt ... ttcaaaacagAAAACAAGCAAGAGGGTGCACTTTGTGAGGAACCTCATAAGAGAGGTTGCT
aaactttgtttttatatcttatatgtggtcataatattatattgattcaaaacagAAAACAAGCAAGAGGGTGCACTTTGTGAGGAACCTCATAAGAGAGGTTGCTGGTTTTGCACCCTATGAAAAGCGTATAACTGAGTTGCTGAAGGTTGGGA
tattgat putative branch site (score: 3)
tttttatatcttatat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| taattcatcctcatccactatagaaataattaagaaaggcatcagaaactttgtttttatatcttatatgtggtcataatattatattgattcaaaacagAAAACAAGCAAGAGGGTGCACTTTGTGAGGAACCTCATAAGAGAGGTTGCTGGTTTTGCACCCTATGAAAAGCGTATAACTGAGTTGCTGAAGGTTGGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG