1 5' 3' | 2 5' 3' | 3 5' 3' |
...cagattatggtgttggaagtgtatttgattgatttttcttgaaagtgttttaaattatgtggtctatatgtggtcctacaattatatggattcaaaacagAAAACAAGCAAGAGGGTGCACTTTGTGAGGAACCTCATAAGAGAGGTAGCCGGTTTTGCACCCTATGAAAAGCGTATAACTGAGTTGCTGAAGGTTGGGA
species | Glycine max |
transcript | GLYMA20G29980.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: ACGTCGTCACCAAGAAGGAATTGCCTCCACGCCCCTCAGATCGTAAGGTG AAAACAAGCAAGAGGGTGCACTCTGTGAGGAACCTCATAAGAGAGGTAGCCEST: gi|7795362|gb|AW780821.1|AW780821
genomic: ACGTCGTCACCAAGAAGGAATTGCCTCCACGCCCCTCAGATCGTAAGGGGgtaagttttt ... ttcaaaacagAAAACAAGCAAGAGGGTGCACTTTGTGAGGAACCTCATAAGAGAGGTAGCC
EST: ACGTCGTCACCAAGAAGGAATTGCCTTCACGCCCCTCAGATCGTAAGGGG AAAACAAGCAAGAGGGTGCACTTTGTGAGGAACCTCATAAGAGAGGTAGCCEST: gi|15662734|gb|BI700105.1|BI700105
genomic: ACGTCGTCACCAAGAAGGAATTGCCTCCACGCCCCTCAGATCGTAAGGGGgtaagttttt ... ttcaaaacagAAAACAAGCAAGAGGGTGCACTTTGTGAGGAACCTCATAAGAGAGGTAGCC
EST: ACGTCGTCACCAAGAAGGAATTGCCTCCACGCCCCTCAGATCGTAAGGGG AAAACAAGCAAGAGGGTGCACTTTGTGAGGAACCTCATAAGAGAGGTAGCC
genomic: ACGTCGTCACCAAGAAGGAATTGCCTCCACGCCCCTCAGATCGTAAGGGGgtaagttttt ... ttcaaaacagAAAACAAGCAAGAGGGTGCACTTTGTGAGGAACCTCATAAGAGAGGTAGCC
tgttttaaattatgtggtctatatgtggtcctacaattatatggattcaaaacagAAAACAAGCAAGAGGGTGCACTTTGTGAGGAACCTCATAAGAGAGGTAGCCGGTTTTGCACCCTATGAAAAGCGTATAACTGAGTTGCTGAAGGTTGGGA
tacaattatat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| cagattatggtgttggaagtgtatttgattgatttttcttgaaagtgttttaaattatgtggtctatatgtggtcctacaattatatggattcaaaacagAAAACAAGCAAGAGGGTGCACTTTGTGAGGAACCTCATAAGAGAGGTAGCCGGTTTTGCACCCTATGAAAAGCGTATAACTGAGTTGCTGAAGGTTGGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - -gtgttgg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tcctaca