1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
...gatatggttccagaagcttgtgggactaatattccaggtccagatttgtctcctaagcaaagcatgggtactcctaacaaagcagtgacaccttttgtagCTATGAAAGAAATGAAGACAGTGACAATCAAGGCAACATACAGAGAAGATATCATAAGATTTCGGGTCTCGTTGACCTGTGGCATTGTTGAACTGAAAGA
species | Glycine max |
transcript | GLYMA20G29960.1 |
intron # | 8 |
splice site | 3' |
intron type | U2 |
ttgtctcctaagcaaagcatgggtactcctaacaaagcagtgacaccttttgtagCTATGAAAGAAATGAAGACAGTGACAATCAAGGCAACATACAGAGAAGATATCATAAGATTTCGGGTCTCGTTGACCTGTGGCATTGTTGAACTGAAAGA
tcctaac putative branch site (score: 1)
cacctttt putative PPT
taacaaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gatatggttccagaagcttgtgggactaatattccaggtccagatttgtctcctaagcaaagcatgggtactcctaacaaagcagtgacaccttttgtagCTATGAAAGAAATGAAGACAGTGACAATCAAGGCAACATACAGAGAAGATATCATAAGATTTCGGGTCTCGTTGACCTGTGGCATTGTTGAACTGAAAGA
- - tggttcc
- - - - - - - - -ttgtggg
- - - - - - - - - - - - - - - - -ccaggtc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gcatggg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - cctaaca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - cagtgac