1 5' 3' | 2 5' 3' | 3 5' 3' |
...tgtcaacctaagcttgccaagattttaataaatttttaaaattctaattcttcaaaatttatgtgtttgttgttttataatttttgctcatcttttgtagGCTATCCCAGGCATGCTACTGGCTTTAGTCCTCTGCTTTGATTATCGCAAGAGCAGGGATACAGTAAATCTCTTAGAGTTACATTCCTCAAAGGGGCACA
species | Glycine max |
transcript | GLYMA20G29950.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: GATGCTTGGTTTAGGAGACATG GCTATCCCAGGCATGCTACTGGCTTTAGTCCTCTGCTTTGATTATCGCAAGEST: gi|16343545|gb|BI969140.1|BI969140
genomic: GATGCTTGGTTTAGGAGACATGgtatgacatt ... tcttttgtagGCTATCCCAGGCATGCTACTGGCTTTAGTCCTCTGCTTTGATTATCGCAAG
EST: TTCCTGGAGAGAATGCGACAGACTTCATGATGCTTGGTTTAGGAGACATG GCTATCCCAGGCATGCTACTGGCTTTAGTCCTCTGCTTTGATTATCGCAAGEST: gi|192321497|gb|FK012875.1|FK012875
genomic: TTCCTGGAGAGAATGCGACAGACTTCATGATGCTTGGTTTAGGAGACATGgtatgacatt ... tcttttgtagGCTATCCCAGGCATGCTACTGGCTTTAGTCCTCTGCTTTGATTATCGCAAG
EST: TTCCTGGAGAGA-TGCGACAGACTTCATGATGCTTGGTTTAG-AGACATG GCTATCC-AGGCATGCTACTGGCTTTAGTC-TCTGCTTTGATEST: gi|209715393|gb|BW684691.1|BW684691
genomic: TTCCTGGAGAGAATGCGACAGACTTCATGATGCTTGGTTTAGGAGACATGgtatgacatt ... tcttttgtagGCTATCCCAGGCATGCTACTGGCTTTAGTCCTCTGCTTTGAT
EST: TTCCTGGAGAGAATGCGACAGACTTCATGATGCTTGGTNTAGGAGACATG GCTATCCCAGGCATGCTACTGGCTTTAGTCCTCTGCTTTGATTATCGCAAG
genomic: TTCCTGGAGAGAATGCGACAGACTTCATGATGCTTGGTTTAGGAGACATGgtatgacatt ... tcttttgtagGCTATCCCAGGCATGCTACTGGCTTTAGTCCTCTGCTTTGATTATCGCAAG
aattcttcaaaatttatgtgtttgttgttttataatttttgctcatcttttgtagGCTATCCCAGGCATGCTACTGGCTTTAGTCCTCTGCTTTGATTATCGCAAGAGCAGGGATACAGTAAATCTCTTAGAGTTACATTCCTCAAAGGGGCACA
ttctaat putative branch site (score: 2)
tttttgctcatctttt putative PPT
ttcaaaatttatgtgt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tgtcaacctaagcttgccaagattttaataaatttttaaaattctaattcttcaaaatttatgtgtttgttgttttataatttttgctcatcttttgtagGCTATCCCAGGCATGCTACTGGCTTTAGTCCTCTGCTTTGATTATCGCAAGAGCAGGGATACAGTAAATCTCTTAGAGTTACATTCCTCAAAGGGGCACA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCAG
-gtcaacc
- - - - - -gcttgcc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgtttgt