Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CCGTCTCCACCACCTCGTCGAACTCGCCGCCTCGCGCCTCCTCTCCGCCGGCATCAAACCCGGCGATGTCGTCGCCCTCACCTTCCCCAACACCGTCGAGgtcctctccgatcctcattgcttcattgccaacacacacacacacacacacaaaaactattttatttatcatttattatttctaattcattttttaatattatatttattttcag

Basic information

species Glycine max
transcript GLYMA20G29850.1
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA20G29850.1 (Glycine max), 5'ss of exon 1
lower sequence: LOC_Os04g58710.1 (Oryza sativa), 5'ss of exon 1
CCGTCTCCACCACCTCGTCGAACTCGCCGCCTCGCGCCTCCTCTCC---GCCGGCATCAAACCCGGCGATGTCGTCGCCCTCACCTTCCCCAACACCGTCGAGgtcct-ctccgatcctcattgct-tcattgccaacac-acacacacacacacacaaaaactattttatttatcatttattatttctaattcattttttaatattatatttattttcag
    ||| ||   ||||||||   ||| ||| ||||||||  | ||   || ||| |    |||||| | |||||||| ||| ||||||||||||||||||||||    | ||  ||      ||| |   |  ||     ||   ||   |    |  |  ||  | |  || |  | | || || |                                 
---GCTCGACGCGCTCGTCGACGCCGCGGCCGCGCGCCTCGCCGCCGATGCGGGCGTGCTCCCCGGCCACGTCGTCGCGCTCGCCTTCCCCAACACCGTCGAGgtaaagcaccagtcacagaagctgttgatatcacggtgacgatcatcgagctgctgatgctgatctggttcttgtgtgtttttgcag-------------------------------

upper sequence: GLYMA20G29850.1 (Glycine max), 5'ss of exon 1
lower sequence: GRMZM2G333861_T01 (Zea mays), 5'ss of exon 1
CCGTCTCCACCACCTCGTCGAACTCGCCGCCTCGCGCCTCCTCTCC---GCCGGCATCAAACCCGGCGATGTCGTCGCCCTCACCTTCCCCAACACCGTCGAGgtcctctccgatcctcattgcttcattgccaacacacacacacacacacacaaaaactattttatttatcatttattatttctaattcattttttaatattatatttattttcag
    ||| ||   ||||||||    || ||| | || |||  | ||   || ||  |    || ||| | |||||||| ||| |||||||||||||||||||||| |    |  || |      |  || |    | |  || || |  | || |  | |          |  | |    |   || |  |   |   ||    || | ||| | || 
---CCTCGACGCTCTCGTCGACGCGGCGGCCGCACGACTCGCCGCCGACGCTGGAGTTCTCCCGGGCCACGTCGTCGCGCTCTCCTTCCCCAACACCGTCGAGgttcgtctccttctttcgaattcgatcggtg-cgcg-acgcagagccccagagtagc----------aggagtcgggac--ctgacgcgcgtgcgaacgcgatctgtatgtaca-

upper sequence: GLYMA20G29850.1 (Glycine max), 5'ss of exon 1
lower sequence: AT3G48990.1 (Arabidopsis thaliana), 5'ss of exon 1
CCGTCTCCACCACCTCGTCGAACTCGCCGCCTCGCGCCTCCTCTCCG---CCGGCATCAAACCCGGCGATGTCGTCGCCCTCACCTTCCCCAACACCGTCGAGgtcctctccga--tcctcatt---------------gcttcattgccaacacacacacacacacacacaaaaactattttatttatcatttat---tatttctaattcattttttaat---attatatttattttcag-------------------------------------------------------
   ||| ||| | ||  |||||| |||||| || |||||  ||||||   | || |||||||||||||||||||| || ||||||||||| ||||||||||||||  | |  ||  |  ||||                ||||| || |             |   |  |  ||    ||   |   |  ||||||   ||| | ||| ||  || |||||      || || |||| | |                                                       
---TCTTCACGATCTAATCGAACGCGCCGCTTCACGCCTTGTCTCCGACGCTGGAATCAAACCCGGCGATGTCGTTGCTCTCACCTTCCCTAACACCGTCGAGgtattttaagaggttttcatatatttcgatttaaaagcttcgtttctggttttgttttgcgtgctgaagaatcacatgggaagcagaatttatgaatatctgtaaatcgcttcttaattgagaaattttgatttccggattcagatgatttttttggatgaatttggttttgattttttttttttgttttcag